Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.4e-151 538.9 284 100.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.3e-129 465.3 286 88.5
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 8.3e-112 407.5 287 80.8
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.3e-104 383.6 271 78.6
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.5e-100 369.4 295 73.2
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.5e-97 360.1 301 69.8
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.1e-87 327.4 299 63.2
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 3.1e-82 309.3 289 67.1
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 4.6e-78 295.4 290 62.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 4.6e-78 295.4 290 62.1
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 6.6e-77 291.6 290 61.4
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.1e-58 229.6 331 48.9
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.4e-56 221.9 331 51.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 6.0e-38 162.2 308 38.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 7.9e-38 161.8 312 40.1
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.5e-36 157.5 321 39.3
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 5.7e-36 155.6 318 40.6
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.3e-35 154.5 327 38.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.8e-35 153.3 303 40.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.7e-35 152.9 306 40.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.2e-35 151.8 292 41.4
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.4e-34 151.0 304 39.8
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.8e-34 150.6 326 38.0
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 5.3e-34 149.1 226 45.1
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 5.3e-34 149.1 294 42.2
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 6.9e-34 148.7 312 37.5
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 9.0e-34 148.3 308 40.3
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 2.6e-33 146.7 284 39.1
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.4e-33 146.4 292 41.1
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 7.6e-33 145.2 278 40.3
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.0e-32 144.8 245 41.2
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.9e-32 143.3 331 37.2
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 6.5e-32 142.1 246 42.3
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 6.5e-32 142.1 343 37.3
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.1e-31 141.4 305 39.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.4e-31 141.0 311 35.0
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.9e-31 140.6 320 36.9
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 2.5e-31 140.2 292 39.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 3.2e-31 139.8 307 39.1
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 4.2e-31 139.4 322 37.6
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 7.2e-31 138.7 278 38.8
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 3.6e-30 136.3 326 35.9
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.6e-30 136.3 315 38.4
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 6.1e-30 135.6 324 36.4
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.0e-29 134.8 308 36.7
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 3.0e-29 133.3 224 42.4
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 3.0e-29 133.3 224 42.4
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 6.7e-29 132.1 297 39.7
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 8.7e-29 131.7 303 36.0
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.1e-28 131.3 342 35.7
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-28 131.3 233 38.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.5e-28 131.0 299 41.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.5e-28 131.0 303 36.0
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.9e-28 130.6 311 37.3
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.9e-28 130.6 270 40.4
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-28 130.2 224 42.0
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-28 130.2 224 42.0
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-28 128.6 225 41.3
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-28 128.6 225 41.3
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 9.7e-28 128.3 316 37.3
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.6e-27 127.5 236 38.1
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.6e-27 127.5 236 38.1
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.6e-27 127.5 300 35.7
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-27 127.5 225 41.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.7e-27 126.3 302 40.1
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.8e-27 125.9 236 37.7
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 6.3e-27 125.6 307 36.8
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 6.3e-27 125.6 291 37.1
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.3e-27 125.6 205 43.4
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 6.3e-27 125.6 297 37.4
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 8.2e-27 125.2 301 37.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.1e-26 124.8 290 39.7
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.4e-26 124.4 261 36.4
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.8e-26 124.0 233 38.6
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.8e-26 124.0 305 36.1
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 2.4e-26 123.6 282 38.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 2.4e-26 123.6 315 35.9
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.1e-26 122.9 294 42.9
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 4.1e-26 122.9 291 38.8
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 5.3e-26 122.5 291 38.8
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.0e-25 120.6 307 38.4
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 2.6e-25 120.2 290 38.6
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 4.5e-25 119.4 299 36.5
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 4.5e-25 119.4 277 37.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 7.7e-25 118.6 285 35.1
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 1.0e-24 118.2 211 39.3
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.0e-24 118.2 336 33.3
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.7e-24 117.5 294 35.7
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.7e-24 117.5 294 34.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 2.2e-24 117.1 276 32.6
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.9e-24 116.7 328 34.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 5.0e-24 115.9 222 37.8
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 6.5e-24 115.5 276 42.0
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 6.5e-24 115.5 284 35.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.9e-23 114.0 293 39.2
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.5e-23 113.6 334 33.5
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.5e-23 113.6 306 36.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.2e-23 112.8 318 33.3
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.2e-22 111.3 293 39.2
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.2e-22 111.3 319 33.2
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.7e-22 110.2 292 38.7
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.6e-22 109.8 291 33.3
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.6e-22 109.4 165 45.5
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 6.1e-22 109.0 303 35.0
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 6.1e-22 109.0 302 36.4
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.0e-21 108.2 287 35.2
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.4e-21 107.8 284 35.9
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-21 107.8 200 40.0
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.8e-21 107.5 198 39.9
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.8e-21 107.5 289 35.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.3e-21 107.1 284 34.2
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 8.8e-21 105.1 301 32.6
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.1e-20 104.8 298 33.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-20 104.4 200 39.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.6e-20 103.6 229 42.8
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 4.3e-20 102.8 356 32.9
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.7e-19 100.9 284 35.2
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 8.2e-19 98.6 304 31.9
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-18 98.2 240 35.4
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.4e-18 97.8 283 32.9
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.4e-18 97.1 202 37.6
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.1e-18 96.7 258 36.0
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 3.1e-18 96.7 221 38.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.3e-18 95.9 287 28.9
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.2e-17 94.7 312 32.1
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 5.9e-17 92.4 304 32.9
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.7e-16 90.9 277 33.9
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 8.5e-16 88.6 278 33.5
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.4e-15 87.8 344 30.8
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.4e-15 87.8 199 38.7
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.4e-15 87.8 204 35.8
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 3.2e-15 86.7 282 31.6
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 7.2e-15 85.5 233 35.2
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 9.4e-15 85.1 291 32.0
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 9.4e-15 85.1 82 61.0
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 9.4e-15 85.1 396 31.1
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.4e-15 85.1 241 34.4
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.2e-14 84.7 266 31.2
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.6e-14 84.3 189 41.8
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.8e-13 80.9 300 33.7
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.3e-12 76.6 75 54.7
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 7.4e-12 75.5 279 30.1
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.7e-11 73.2 82 52.4
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 8.2e-11 72.0 246 33.7
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.4e-10 71.2 172 34.9
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 1.4e-10 71.2 277 30.0
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 3.5e-09 66.6 78 48.7
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.3e-08 64.7 202 33.2
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 2.1e-06 57.4 229 30.6
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.6e-06 56.6 143 32.2
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 4.7e-06 56.2 156 35.9


User provided reference genes

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