Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 3.3e-127 458.4 227 100.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.3e-125 452.2 227 98.2
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 6.8e-125 450.7 227 96.0
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 7.8e-113 410.6 227 90.3
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.3e-112 409.1 224 91.5
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 6.6e-112 407.5 228 89.0
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.1e-111 406.8 224 91.1
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-111 406.0 228 89.0
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 2.5e-111 405.6 228 89.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.6e-110 401.7 227 87.2
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.6e-110 401.7 227 87.2
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 3.6e-110 401.7 227 88.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 8.9e-109 397.1 222 87.8
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.0e-104 382.1 221 83.3
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.2e-100 370.2 227 83.7
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 6.6e-96 354.4 215 78.1
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-95 352.8 228 81.6
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 4.3e-95 351.7 228 80.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 4.3e-95 351.7 228 80.3
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 1.3e-94 350.1 216 77.3
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.4e-93 345.9 222 75.7
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 3.4e-92 342.0 214 76.6
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 4.4e-92 341.7 224 78.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.9e-91 339.0 220 75.0
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.2e-90 335.5 218 74.3
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 9.3e-90 334.0 226 71.7
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.6e-89 333.2 215 74.4
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.7e-89 332.4 228 70.6
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 6.0e-89 331.3 210 75.7
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.0e-88 330.5 220 73.2
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.7e-88 329.7 219 74.4
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.3e-88 329.3 213 74.2
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.5e-87 325.9 213 73.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 4.3e-87 325.1 221 73.3
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 5.6e-87 324.7 221 74.2
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.4e-85 320.1 211 74.4
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.4e-85 319.3 210 73.8
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 2.4e-85 319.3 221 72.4
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 2.4e-85 319.3 225 70.7
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.1e-85 318.9 210 74.3
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 5.3e-85 318.2 214 72.9
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 9.0e-85 317.4 221 71.9
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.2e-84 317.0 219 71.2
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 1.2e-84 317.0 218 72.5
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 2.0e-84 316.2 227 70.5
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.0e-84 316.2 220 69.5
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 4.5e-84 315.1 219 70.3
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 5.8e-84 314.7 220 68.6
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 5.8e-84 314.7 213 72.3
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 9.9e-84 313.9 220 69.1
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.3e-83 313.5 214 71.5
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.8e-83 312.0 218 69.7
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 4.9e-83 311.6 221 69.7
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 6.4e-83 311.2 213 68.5
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.4e-83 310.8 220 69.1
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.1e-82 310.5 220 67.3
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.1e-82 310.5 218 67.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.1e-82 310.5 218 69.7
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.1e-82 310.5 220 70.0
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 7.1e-82 307.8 219 69.4
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.3e-82 307.4 218 69.3
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.6e-81 306.6 220 68.2
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 4.6e-81 305.1 220 68.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.0e-80 303.9 220 68.6
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.0e-80 303.9 213 71.4
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.0e-80 303.9 213 71.4
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.0e-80 303.9 213 71.4
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.0e-80 303.9 213 71.4
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.0e-80 303.9 213 71.4
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 3.0e-80 302.4 223 68.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 3.0e-80 302.4 215 67.9
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 8.7e-80 300.8 214 67.8
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.9e-79 299.7 221 67.0
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.9e-79 299.7 212 68.9
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 7.4e-79 297.7 214 67.3
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.6e-78 296.6 215 69.8
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.8e-78 295.8 215 67.9
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 4.8e-78 295.0 218 68.3
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 4.8e-78 295.0 214 68.7
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.9e-77 291.2 214 68.7
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.2e-76 290.4 214 65.9
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 2.6e-76 289.3 173 84.4
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 2.6e-76 289.3 218 67.4
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.6e-76 289.3 220 68.2
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.6e-76 287.7 220 67.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.7e-75 286.6 224 66.1
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.8e-75 285.4 218 66.5
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.9e-75 285.0 220 67.3
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 4.9e-75 285.0 218 66.5
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 2.5e-74 282.7 221 67.0
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 2.5e-74 282.7 216 67.1
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.2e-73 280.4 225 65.8
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.1e-73 279.6 212 67.9
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.1e-73 279.6 212 67.9
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.7e-73 279.3 218 65.6
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.7e-73 279.3 213 65.7
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.7e-73 279.3 213 65.7
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 3.5e-73 278.9 220 65.5
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 6.0e-73 278.1 223 63.7
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 6.0e-73 278.1 221 64.7
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 3.9e-72 275.4 217 64.1
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 6.7e-72 274.6 218 62.4
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 6.7e-72 274.6 203 66.5
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.1e-70 269.6 220 63.6
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.8e-70 269.2 211 63.0
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.8e-70 269.2 211 63.0
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 4.8e-70 268.5 214 64.0
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.8e-69 266.5 218 63.3
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 3.1e-69 265.8 211 64.5
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 5.8e-68 261.5 220 62.3
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 7.6e-68 261.2 184 69.0
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.3e-67 260.4 217 61.8
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 2.1e-65 253.1 221 60.6
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 6.1e-65 251.5 211 58.3
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 6.7e-64 248.1 211 58.3
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.6e-62 243.4 211 57.8
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 2.2e-62 243.0 221 57.0
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.7e-62 242.3 170 69.4
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.8e-61 240.0 212 53.8
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.8e-61 240.0 215 53.0
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 6.9e-61 238.0 215 60.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.2e-60 237.3 171 66.1
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 7.7e-60 234.6 172 66.9
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.2e-57 227.3 164 69.5
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.4e-56 223.8 179 65.9
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 2.0e-55 219.9 128 78.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 3.3e-55 219.2 165 63.0
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.2e-54 216.5 217 56.7
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.2e-49 200.7 139 69.8
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 2.1e-49 199.9 217 51.6
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 6.7e-48 194.9 226 51.8
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.3e-47 192.6 223 48.9
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 3.7e-46 189.1 131 68.7
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.5e-42 177.2 217 50.7
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 1.1e-39 167.5 133 62.4
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 3.0e-32 142.9 90 74.4
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 5.2e-32 142.1 99 67.7
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.9e-28 128.6 95 70.5
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 2.6e-15 86.7 207 32.4
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 7.5e-07 58.5 161 29.8
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 1.7e-06 57.4 119 31.1
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 6.4e-06 55.5 162 24.7


User provided reference genes

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