Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 1.2e-124 449.9 229 100.0
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 7.6e-116 420.6 229 93.0
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 5.6e-111 404.4 229 89.1
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 4.6e-97 358.2 237 76.8
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 3.7e-94 348.6 238 74.4
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 1.4e-93 346.7 238 73.9
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 2.4e-93 345.9 237 75.5
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 3.1e-93 345.5 238 71.8
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 5.3e-93 344.7 237 74.3
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 9.0e-93 344.0 238 75.2
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 2.1e-81 306.2 243 64.2
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 1.1e-66 257.3 229 58.1
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.2e-63 247.3 161 76.4
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 3.8e-51 205.7 232 49.1
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 4.7e-49 198.7 201 49.8
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 2.6e-47 193.0 237 47.3
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 5.7e-47 191.8 200 47.0
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 7.5e-47 191.4 230 45.2
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.1e-45 187.6 229 45.9
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.1e-45 187.6 229 45.9
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 1.1e-45 187.6 236 44.9
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 1.4e-45 187.2 232 48.7
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 5.4e-45 185.3 226 46.0
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 5.4e-45 185.3 230 44.8
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 1.6e-44 183.7 229 44.1
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 2.7e-44 183.0 173 50.9
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 4.5e-44 182.2 230 43.9
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 4.5e-44 182.2 236 45.8
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 5.9e-44 181.8 229 41.9
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 2.3e-43 179.9 199 48.2
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 6.6e-43 178.3 234 43.6
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 1.5e-42 177.2 174 49.4
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.9e-42 176.8 200 47.0
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 5.6e-42 175.3 234 43.2
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 9.5e-42 174.5 229 42.8
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 4.7e-41 172.2 225 41.8
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 8.0e-41 171.4 239 40.6
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 2.3e-40 169.9 191 47.1
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 3.1e-40 169.5 206 45.1
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 3.1e-40 169.5 239 40.2
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 5.2e-40 168.7 206 44.7
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 5.2e-40 168.7 230 40.9
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 6.8e-40 168.3 166 47.6
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 1.2e-39 167.5 173 48.0
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 1.5e-39 167.2 206 44.7
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 2.6e-39 166.4 173 46.2
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 2.6e-39 166.4 177 49.7
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 3.4e-39 166.0 229 40.6
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 4.4e-39 165.6 171 48.0
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 7.5e-39 164.9 232 39.7
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 2.2e-38 163.3 210 42.9
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 2.9e-38 162.9 223 42.2
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 3.7e-38 162.5 233 41.2
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 3.7e-38 162.5 197 43.1
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 6.4e-38 161.8 233 41.2
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 6.4e-38 161.8 199 43.2
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 8.3e-38 161.4 167 50.3
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 1.9e-37 160.2 233 40.3
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 2.4e-37 159.8 198 42.4
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 2.4e-37 159.8 194 43.3
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 4.1e-37 159.1 203 40.4
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 7.0e-37 158.3 232 41.8
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 1.2e-36 157.5 200 43.5
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 1.6e-36 157.1 241 39.0
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 2.0e-36 156.8 205 42.9
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 2.0e-36 156.8 177 44.6
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 2.7e-36 156.4 203 42.9
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.0e-35 154.5 241 38.6
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 1.0e-35 154.5 219 41.1
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.3e-35 154.1 179 46.4
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.5e-34 150.6 175 43.4
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 3.3e-34 149.4 242 38.8
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.3e-34 149.1 241 37.8
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.3e-34 149.1 241 37.3
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 9.5e-34 147.9 177 40.7
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 1.2e-33 147.5 176 42.0
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 8.0e-33 144.8 177 39.5
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 8.0e-33 144.8 177 40.1
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 1.8e-32 143.7 208 40.9
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 8.9e-32 141.4 233 39.1
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 8.9e-32 141.4 176 40.3
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 2.0e-31 140.2 175 41.1
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 9.8e-31 137.9 175 40.6
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 9.8e-31 137.9 259 35.5
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 1.4e-29 134.0 114 54.4
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 4.1e-29 132.5 170 41.2
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 5.4e-29 132.1 229 34.9
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 7.1e-29 131.7 173 40.5
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.6e-28 130.6 305 31.5
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 8.6e-27 124.8 194 37.6
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 1.5e-26 124.0 173 40.5
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 2.1e-25 120.2 231 36.8
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 1.4e-21 107.5 115 46.1
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 3.2e-21 106.3 95 50.5
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 6.6e-19 98.6 78 55.1
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 8.6e-19 98.2 121 38.8
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 4.7e-17 92.4 88 54.5
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 6.8e-16 88.6 93 44.1
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 1.3e-11 74.3 113 38.1
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 1.3e-11 74.3 65 50.8
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.5e-10 70.1 78 44.9
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 1.6e-09 67.4 71 49.3
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 5.8e-07 58.9 61 49.2


User provided reference genes

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