Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 7.5e-132 473.8 226 100.0
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.9e-112 408.7 228 86.4
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 9.5e-103 377.1 226 80.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.9e-98 362.8 238 73.1
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 2.3e-96 355.9 226 75.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.9e-96 355.1 229 75.5
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 9.5e-95 350.5 223 76.2
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 6.9e-77 291.2 226 65.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 7.6e-76 287.7 227 65.6
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.1e-70 269.6 143 91.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.3e-69 265.0 230 55.2
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.9e-58 229.9 218 51.8
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.2e-58 229.2 143 77.6
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.6e-57 226.9 218 50.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.6e-57 225.3 229 49.3
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.0e-56 224.2 229 49.3
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.3e-56 223.8 218 49.5
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.8e-56 223.4 229 49.3
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 6.7e-56 221.5 229 49.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 6.7e-56 221.5 226 46.9
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-55 220.7 229 48.5
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.1e-55 220.7 227 48.9
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.5e-55 219.5 229 48.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 7.4e-55 218.0 226 48.2
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 9.6e-55 217.6 224 46.9
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.6e-54 216.9 223 48.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.1e-54 216.5 212 48.6
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.1e-54 216.5 218 48.6
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 2.8e-54 216.1 229 47.6
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.8e-54 215.3 229 48.9
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.0e-52 209.9 218 47.7
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.0e-51 207.6 225 47.1
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.7e-51 206.8 217 47.5
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.7e-51 206.8 205 47.3
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.8e-51 205.7 212 45.8
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 3.8e-51 205.7 231 47.6
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 3.8e-51 205.7 220 47.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 3.8e-51 205.7 220 45.5
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 6.5e-51 204.9 214 48.6
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 8.4e-51 204.5 217 45.2
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.1e-50 204.1 206 47.1
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-50 203.8 214 47.2
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.4e-50 203.8 230 44.3
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.4e-50 203.8 218 47.2
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.9e-50 203.4 206 45.1
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.5e-50 203.0 212 44.8
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.2e-50 202.6 218 45.0
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 3.5e-49 199.1 224 46.0
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 6.1e-49 198.4 213 44.6
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 7.9e-49 198.0 235 43.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 7.9e-49 198.0 215 46.0
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.0e-48 197.6 214 46.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.3e-48 197.2 211 46.0
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.8e-48 196.8 215 44.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.3e-48 196.4 204 47.5
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.9e-48 195.7 224 45.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 5.1e-48 195.3 229 43.7
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.1e-48 195.3 224 44.6
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 6.7e-48 194.9 195 47.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 8.7e-48 194.5 218 45.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 8.7e-48 194.5 215 44.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.5e-47 193.7 224 45.1
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.5e-47 193.7 202 48.5
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.5e-47 193.7 212 44.8
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 3.3e-47 192.6 215 43.3
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.3e-47 192.2 217 44.2
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.3e-47 192.2 207 44.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 4.3e-47 192.2 221 45.7
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.7e-47 191.8 221 44.3
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 5.7e-47 191.8 195 47.7
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 9.7e-47 191.0 220 45.5
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 9.7e-47 191.0 207 45.9
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.3e-46 190.7 226 43.4
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.2e-46 189.9 205 43.9
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.2e-46 189.9 215 44.7
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.8e-46 189.5 214 43.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 4.8e-46 188.7 221 43.0
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 8.2e-46 188.0 220 41.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.2e-46 188.0 226 43.4
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 8.2e-46 188.0 217 45.2
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.1e-45 187.6 188 48.4
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.4e-45 187.2 214 43.9
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 3.1e-45 186.0 192 47.4
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.1e-45 185.7 214 43.9
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.3e-45 185.3 220 44.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 5.3e-45 185.3 213 42.3
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 5.3e-45 185.3 215 42.3
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 9.0e-45 184.5 243 42.4
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.2e-44 184.1 215 42.8
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.5e-44 183.7 216 43.1
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.0e-44 183.3 207 44.0
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.6e-44 183.0 216 44.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.6e-44 183.0 197 47.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.4e-44 182.6 200 45.0
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.4e-44 182.6 196 45.4
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.4e-44 182.6 192 45.3
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 3.4e-44 182.6 197 45.7
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 4.5e-44 182.2 215 42.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 5.9e-44 181.8 218 44.5
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 5.9e-44 181.8 218 44.0
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.3e-43 180.6 225 42.2
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.3e-43 180.6 205 42.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.3e-43 180.6 216 44.0
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.7e-43 180.3 206 43.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.7e-43 180.3 195 46.7
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.2e-43 179.9 226 42.0
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 5.0e-43 178.7 204 43.6
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.5e-43 178.3 200 44.5
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.5e-43 178.3 197 47.2
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 6.5e-43 178.3 200 45.0
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.1e-42 177.6 232 43.5
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.1e-42 177.6 219 43.8
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.4e-42 177.2 214 40.7
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.4e-42 177.2 215 43.3
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.4e-42 177.2 207 43.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.4e-42 177.2 211 43.6
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-42 176.8 217 42.9
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.2e-42 174.9 216 40.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 9.4e-42 174.5 230 40.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.2e-41 174.1 210 43.3
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.2e-41 174.1 211 40.3
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.1e-41 173.3 231 41.6
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.7e-41 172.9 231 42.9
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.7e-41 172.9 231 42.9
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.7e-41 172.9 257 37.0
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 7.9e-41 171.4 212 41.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.0e-40 171.0 230 39.6
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.8e-40 170.2 227 41.9
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.8e-40 170.2 242 38.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 2.3e-40 169.9 193 43.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 6.7e-40 168.3 231 42.0
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-39 167.5 242 38.0
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.0e-39 166.8 231 42.0
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 3.3e-39 166.0 212 42.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 4.3e-39 165.6 214 42.1
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 5.7e-39 165.2 149 50.3
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 9.7e-39 164.5 227 41.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 6.3e-38 161.8 200 43.5
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.1e-37 161.0 237 37.1
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-37 160.6 223 41.7
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.8e-37 160.2 205 44.4
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 5.3e-37 158.7 200 41.0
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 9.1e-37 157.9 196 41.3
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.5e-36 157.1 174 44.3
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.0e-36 156.8 193 39.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.4e-36 156.0 135 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 5.9e-36 155.2 221 37.1
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-35 154.1 114 66.7
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.9e-35 152.9 186 41.9
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.5e-35 151.8 228 39.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.5e-35 151.8 228 39.5
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 7.2e-34 148.3 196 41.3
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.0e-32 142.9 264 31.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 4.8e-30 135.6 114 60.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.4e-29 134.0 207 38.6
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 9.1e-29 131.3 165 40.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 4.5e-28 129.0 145 43.4
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 3.2e-26 122.9 225 35.1
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 7.2e-26 121.7 65 84.6
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.6e-25 119.4 191 35.6
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.4e-21 107.5 144 42.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.8e-21 107.1 119 46.2
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.3e-21 105.5 141 39.0
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 9.4e-18 94.7 86 54.7
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 9.4e-18 94.7 145 37.2
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.0e-16 91.3 94 48.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.0e-16 91.3 181 33.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.4e-13 80.9 80 50.0
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 6.5e-11 72.0 109 41.3
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.0e-08 64.7 62 50.0
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.0e-07 60.5 160 28.1
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.8e-07 58.2 78 43.6


User provided reference genes

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