Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 5.5e-90 334.3 177 100.0
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 8.3e-78 293.9 171 90.1
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 4.9e-70 268.1 172 88.4
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 7.0e-69 264.2 170 84.1
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 1.2e-65 253.4 171 80.1
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 2.3e-64 249.2 168 80.4
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 1.5e-63 246.5 171 76.6
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.2e-30 136.3 178 52.8
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 2.9e-30 136.0 174 51.7
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 4.9e-30 135.2 172 51.2
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 8.4e-30 134.4 177 50.3
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.4e-29 131.7 175 51.4
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 5.4e-29 131.7 177 49.7
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.1e-28 129.8 163 50.3
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 7.9e-28 127.9 174 50.6
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.3e-27 127.1 162 51.2
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.8e-27 126.7 177 47.5
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 3.0e-27 125.9 175 48.0
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.0e-27 125.9 166 51.8
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 3.9e-27 125.6 163 48.5
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.9e-27 125.6 175 46.9
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 5.1e-27 125.2 160 51.2
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 5.1e-27 125.2 174 46.0
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.7e-27 124.8 173 45.7
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 8.7e-27 124.4 167 49.7
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.7e-27 124.4 173 46.2
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.7e-27 124.4 175 46.9
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.7e-27 124.4 175 46.9
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 8.7e-27 124.4 172 47.7
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.1e-26 124.0 173 45.1
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 1.1e-26 124.0 175 48.0
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.5e-26 123.6 171 48.0
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 1.5e-26 123.6 168 47.6
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 1.5e-26 123.6 175 48.0
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.9e-26 123.2 166 51.8
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 2.5e-26 122.9 163 50.3
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.5e-26 122.9 173 45.7
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.5e-26 122.9 173 45.7
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.5e-26 122.9 163 47.2
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 3.3e-26 122.5 172 50.0
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 4.3e-26 122.1 170 45.3
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 4.3e-26 122.1 163 46.6
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 5.6e-26 121.7 168 48.2
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.4e-26 121.3 178 46.6
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 7.4e-26 121.3 175 48.0
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 7.4e-26 121.3 175 46.9
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.3e-25 120.6 174 45.4
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.6e-25 120.2 173 45.1
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.6e-25 120.2 174 46.6
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 2.1e-25 119.8 161 49.1
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 2.1e-25 119.8 171 49.1
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.1e-25 119.8 161 47.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 2.1e-25 119.8 161 47.2
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 2.8e-25 119.4 173 50.3
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.7e-25 119.0 171 46.2
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 6.2e-25 118.2 177 45.2
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 6.2e-25 118.2 170 44.1
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 6.2e-25 118.2 171 45.0
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 8.1e-25 117.9 180 46.7
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 8.1e-25 117.9 173 45.7
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 1.4e-24 117.1 175 46.9
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 1.4e-24 117.1 172 48.8
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 2.4e-24 116.3 170 48.2
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.4e-24 116.3 178 47.2
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 2.4e-24 116.3 175 45.1
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 5.3e-24 115.2 167 47.3
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 5.3e-24 115.2 163 46.0
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 5.3e-24 115.2 170 47.1
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.9e-24 114.8 176 47.7
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 6.9e-24 114.8 163 45.4
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 6.9e-24 114.8 167 49.7
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 9.0e-24 114.4 179 45.8
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.2e-23 114.0 169 47.3
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.2e-23 114.0 178 45.5
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.2e-23 114.0 178 45.5
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.2e-23 114.0 176 46.6
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.2e-23 114.0 170 44.7
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 1.5e-23 113.6 171 43.3
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.5e-23 113.6 175 44.0
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 1.5e-23 113.6 163 47.2
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.5e-23 113.6 170 46.5
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 2.0e-23 113.2 170 45.9
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.6e-23 112.8 183 42.1
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 4.5e-23 112.1 166 46.4
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 5.8e-23 111.7 171 42.7
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 5.8e-23 111.7 170 44.7
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.8e-23 111.7 179 45.3
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 7.6e-23 111.3 168 47.0
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 7.6e-23 111.3 176 44.3
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 7.6e-23 111.3 170 45.3
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.0e-22 110.9 165 47.3
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.0e-22 110.9 172 46.5
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.0e-22 110.9 167 45.5
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.0e-22 110.9 176 43.2
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 1.0e-22 110.9 161 49.1
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 1.0e-22 110.9 170 43.5
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.3e-22 110.5 175 42.9
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.9e-22 109.4 177 44.6
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.9e-22 109.4 166 44.6
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 3.8e-22 109.0 173 45.1
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 3.8e-22 109.0 170 42.4
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 3.8e-22 109.0 170 43.5
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.8e-22 109.0 169 42.6
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 4.9e-22 108.6 175 45.1
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 6.5e-22 108.2 173 45.1
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 8.4e-22 107.8 161 44.1
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.4e-22 107.8 177 44.6
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 8.4e-22 107.8 170 44.1
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.1e-21 107.5 165 44.2
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 1.1e-21 107.5 207 41.1
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 1.4e-21 107.1 166 46.4
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.9e-21 106.7 170 45.9
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.5e-21 106.3 170 42.9
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 2.5e-21 106.3 161 46.0
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 2.5e-21 106.3 161 46.0
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 2.5e-21 106.3 161 46.0
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 4.2e-21 105.5 175 43.4
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 4.2e-21 105.5 169 40.8
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 7.1e-21 104.8 168 46.4
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 7.1e-21 104.8 163 46.6
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 9.3e-21 104.4 171 45.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.6e-20 103.6 165 46.7
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 2.1e-20 103.2 174 43.1
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 2.1e-20 103.2 171 43.9
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 6.0e-20 101.7 175 38.9
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 6.0e-20 101.7 169 41.4
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 1.0e-19 100.9 139 50.4
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 1.8e-19 100.1 167 40.7
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.3e-19 99.8 159 44.7
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 3.0e-19 99.4 175 38.9
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.0e-19 99.4 175 41.7
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 3.0e-19 99.4 169 42.6
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 3.9e-19 99.0 160 43.8
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 3.9e-19 99.0 171 42.1
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 3.9e-19 99.0 138 47.8
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.7e-19 98.2 180 41.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 8.7e-19 97.8 169 43.2
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 8.7e-19 97.8 177 42.4
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 8.7e-19 97.8 163 44.2
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.1e-18 97.4 167 42.5
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.9e-18 96.7 171 42.7
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 2.5e-18 96.3 173 42.8
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 4.3e-18 95.5 173 41.0
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 7.4e-18 94.7 170 42.4
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 3.7e-17 92.4 160 42.5
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 3.7e-17 92.4 163 42.3
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 3.7e-17 92.4 173 39.9
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 1.1e-16 90.9 173 40.5
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.1e-16 90.9 164 42.1
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 1.4e-16 90.5 171 41.5
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 5.3e-16 88.6 127 47.2
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 5.8e-15 85.1 95 57.9
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 5.8e-15 85.1 160 43.8
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 1.7e-14 83.6 58 81.0
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 2.9e-14 82.8 172 37.8
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 1.1e-13 80.9 175 38.3
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.4e-13 80.5 171 36.3
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 1.4e-13 80.5 172 40.1
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.9e-13 80.1 122 44.3
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 3.2e-13 79.3 118 43.2
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 7.2e-13 78.2 99 51.5
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 7.2e-13 78.2 106 49.1
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 9.3e-13 77.8 151 41.1
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 1.2e-12 77.4 98 49.0
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.6e-12 77.0 169 38.5
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.6e-12 77.0 171 37.4
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 4.6e-12 75.5 167 37.7
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 7.9e-12 74.7 213 32.9
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 1.0e-11 74.3 101 52.5
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 1.3e-11 73.9 172 36.6
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.9e-11 72.4 163 39.3
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 5.1e-11 72.0 159 37.1
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 6.7e-11 71.6 97 45.4
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 8.7e-11 71.2 164 38.4
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 1.1e-10 70.9 111 44.1
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 1.5e-10 70.5 165 38.2
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 4.3e-10 68.9 160 34.4
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 5.7e-10 68.6 165 36.4
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 1.6e-09 67.0 101 47.5
MD04G1127100 Malus domestica HOM05D003527 ORTHO05D004099 7.7e-07 58.2 67 52.2
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.3e-06 57.4 111 39.6
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 6.5e-06 55.1 75 46.7


User provided reference genes

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