Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 2.5e-59 231.9 116 100.0
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 2.4e-57 225.3 116 97.4
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 6.7e-52 207.2 116 89.7
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 3.1e-49 198.4 116 84.5
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 1.3e-47 193.0 117 88.0
Sp7g08770 Schrenkiella parvula HOM05D010528 ORTHO05D005174 2.2e-47 192.2 116 84.5
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 1.1e-43 179.9 117 81.2
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 1.1e-43 179.9 117 81.2
A03p00680 Brassica napus HOM05D010528 ORTHO05D005174 3.1e-41 171.8 116 80.2
A03p00720 Brassica napus HOM05D010528 ORTHO05D005174 3.1e-41 171.8 116 80.2
C03p00950 Brassica napus HOM05D010528 ORTHO05D005174 3.1e-41 171.8 116 80.2
BolC3t12657H Brassica oleracea HOM05D010528 ORTHO05D005174 3.1e-41 171.8 116 80.2
BraA03t09457Z Brassica rapa HOM05D010528 ORTHO05D005174 3.1e-41 171.8 116 80.2
A10p33240 Brassica napus HOM05D010528 ORTHO05D005174 5.3e-41 171.0 117 77.8
BraA10t45352Z Brassica rapa HOM05D010528 ORTHO05D005174 5.3e-41 171.0 117 77.8
BcaB01g06161 Brassica carinata HOM05D010528 ORTHO05D005174 1.3e-39 166.4 116 78.4
BcaNung05923 Brassica carinata HOM05D010528 ORTHO05D005174 1.7e-39 166.0 112 78.6
BcaC06g31989 Brassica carinata HOM05D010528 ORTHO05D005174 3.3e-35 151.8 117 70.9
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.8e-28 129.4 117 66.7
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 4.4e-27 124.8 118 62.7
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 5.0e-23 111.3 118 55.9
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 5.7e-11 71.2 111 38.7
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 1.7e-10 69.7 111 39.6
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 2.8e-10 68.9 78 52.6
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 8.3e-10 67.4 78 51.3
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.2e-08 63.5 102 44.1
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.5e-08 61.6 83 44.6
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 4.5e-08 61.6 83 50.6
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 5.9e-08 61.2 83 44.6
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 5.9e-08 61.2 110 35.5
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.0e-07 60.5 114 39.5
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-07 60.5 80 46.2
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-07 60.5 82 48.8
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 1.0e-07 60.5 103 41.7
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 1.0e-07 60.5 114 36.0
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.9e-07 58.9 78 50.0
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 2.9e-07 58.9 79 45.6
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.9e-07 58.9 79 46.8
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 6.6e-07 57.8 80 51.2
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 8.6e-07 57.4 83 43.4
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 8.6e-07 57.4 108 38.0
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.9e-06 56.2 83 50.6
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.9e-06 56.2 111 37.8
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.9e-06 56.2 111 37.8
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.9e-06 56.2 123 40.7
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 2.5e-06 55.8 98 36.7
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 2.5e-06 55.8 104 43.3
Pp3c23_21800 Physcomitrium patens HOM05D011262 ORTHO05D012767 2.5e-06 55.8 55 45.5
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 2.5e-06 55.8 78 46.2
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 3.3e-06 55.5 82 40.2
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 3.3e-06 55.5 79 46.8
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 7.2e-06 54.3 118 32.2
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 7.2e-06 54.3 115 38.3
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 7.2e-06 54.3 109 40.4
Gorai.006G173200 Gossypium raimondii HOM05D036294 ORTHO05D036268 7.2e-06 54.3 77 42.9
Pp3c20_3210 Physcomitrium patens HOM05D011262 ORTHO05D012767 7.2e-06 54.3 55 45.5
Pp3c8_24610 Physcomitrium patens HOM05D011262 ORTHO05D012767 7.2e-06 54.3 59 42.4
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 9.5e-06 53.9 83 49.4
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 9.5e-06 53.9 109 40.4
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 9.5e-06 53.9 89 40.4
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 9.5e-06 53.9 93 43.0
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 9.5e-06 53.9 88 39.8


User provided reference genes

Program Settings