Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 4.2e-229 797.7 421 100.0
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 3.7e-217 758.1 421 95.2
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 1.0e-195 686.8 423 86.8
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.0e-195 685.3 421 87.2
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 6.8e-195 684.1 422 85.3
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.7e-193 679.5 421 84.3
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 1.3e-190 669.8 424 84.2
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 2.3e-190 669.1 421 85.5
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 6.6e-190 667.5 448 80.8
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 6.6e-190 667.5 422 83.9
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.1e-189 666.8 422 84.4
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 2.5e-189 665.6 422 83.6
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 1.7e-182 642.9 457 77.7
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 3.6e-172 608.6 439 75.9
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 1.1e-163 580.5 421 77.9
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 6.6e-158 561.2 431 74.0
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 2.2e-153 546.2 432 68.8
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 5.5e-128 461.8 433 58.4
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 4.5e-122 442.2 433 55.2
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.7e-121 440.3 432 55.1
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 6.5e-121 438.3 404 57.9
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 6.5e-121 438.3 432 56.0
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 5.5e-120 435.3 433 54.5
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 2.3e-118 429.9 432 55.3
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 1.5e-117 427.2 433 55.0
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.2e-116 423.3 434 52.3
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 7.7e-114 414.8 432 53.2
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.0e-113 414.5 433 53.8
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 2.2e-113 413.3 441 52.6
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.2e-113 413.3 430 53.7
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 6.5e-113 411.8 435 54.0
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 1.0e-110 404.4 435 53.1
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 5.7e-109 398.7 407 55.5
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 1.8e-107 393.7 379 56.2
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 6.9e-107 391.7 445 52.8
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.6e-106 389.8 405 52.1
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 2.2e-105 386.7 386 55.7
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 2.9e-105 386.3 385 54.8
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 1.1e-104 384.4 436 53.4
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 9.4e-104 381.3 382 53.7
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 1.6e-103 380.6 431 50.6
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 2.7e-103 379.8 433 51.3
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 8.0e-103 378.3 433 50.8
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 3.0e-102 376.3 432 50.9
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 9.7e-101 371.3 441 49.7
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 2.4e-99 366.7 401 50.1
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.1e-99 366.3 442 49.5
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.0e-99 365.2 453 48.8
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.6e-98 364.0 443 50.8
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 5.9e-98 362.1 433 48.7
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 6.5e-97 358.6 437 45.5
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 8.5e-97 358.2 399 51.4
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 8.5e-97 358.2 387 52.2
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 8.5e-97 358.2 412 50.0
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 1.1e-96 357.8 440 48.9
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 4.2e-96 355.9 414 49.5
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 3.6e-95 352.8 389 50.4
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 3.0e-94 349.7 372 54.0
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 6.7e-94 348.6 376 51.9
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 8.8e-94 348.2 410 50.0
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 1.5e-93 347.4 433 47.1
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 4.4e-93 345.9 428 48.6
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 2.8e-92 343.2 436 47.5
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 3.7e-92 342.8 371 52.8
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.4e-91 340.9 432 47.0
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.6e-90 337.4 436 46.3
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 2.7e-90 336.7 389 50.1
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 3.5e-90 336.3 399 48.4
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 3.5e-90 336.3 381 50.1
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 7.7e-90 335.1 396 49.0
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 1.7e-89 334.0 396 46.7
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.9e-88 330.5 431 45.9
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 4.2e-88 329.3 385 49.9
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.6e-85 320.1 433 44.8
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.7e-84 317.4 515 41.0
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 5.9e-82 308.9 402 44.0
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 6.6e-81 305.4 440 43.0
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 2.1e-79 300.4 300 56.0
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 1.5e-77 294.3 383 45.2
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 2.6e-77 293.5 383 44.4
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 9.8e-77 291.6 383 44.6
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 5.9e-74 282.3 291 54.0
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 1.1e-72 278.1 542 37.8
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.5e-72 277.7 348 49.1
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 1.5e-72 277.7 318 50.6
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 1.6e-71 274.2 393 44.5
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.4e-70 271.2 390 41.3
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 9.8e-69 265.0 304 50.7
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.3e-65 253.8 390 39.5
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 8.6e-65 251.9 366 40.7
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 4.3e-64 249.6 216 58.3
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.2e-63 248.1 293 48.5
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.1e-62 245.0 346 41.6
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 1.5e-61 241.1 339 43.4
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 6.6e-57 225.7 251 50.6
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 6.2e-55 219.2 427 36.1
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 1.1e-54 218.4 282 45.0
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 8.9e-54 215.3 201 57.2
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.3e-49 200.7 396 37.1
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 1.7e-44 184.5 404 33.9
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 2.1e-39 167.5 379 33.0
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 3.6e-39 166.8 379 33.0
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.8e-38 164.5 243 42.4
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 4.9e-36 156.4 404 30.4
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 7.1e-35 152.5 268 35.8
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 9.3e-35 152.1 374 30.5
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.1e-34 151.0 101 71.3
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.9e-27 127.9 120 55.8
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 2.7e-26 124.0 94 62.8
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 3.5e-26 123.6 406 27.8
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 5.1e-25 119.8 329 35.0
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.1e-22 112.1 123 52.8
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 9.9e-21 105.5 167 41.9
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 9.3e-19 99.0 130 44.6
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 5.6e-16 89.7 143 42.0
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 3.4e-13 80.5 233 33.0
BolC3t12644H Brassica oleracea HOM05D006045 ORTHO05D007678 1.3e-12 78.6 65 72.3
COL.COLO4_14761 Corchorus olitorius HOM05D006045 ORTHO05D007678 1.1e-06 58.9 66 54.5


User provided reference genes

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