Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 5.1e-41 170.6 86 100.0
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 5.9e-37 157.1 87 93.1
CARHR211270 Cardamine hirsuta HOM05D009057 ORTHO05D011698 6.1e-34 147.1 86 87.2
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 2.3e-33 145.2 86 86.0
A10p33500 Brassica napus HOM05D009057 ORTHO05D011698 8.8e-33 143.3 86 84.9
BraA10t45380Z Brassica rapa HOM05D009057 ORTHO05D011698 2.2e-31 138.7 86 83.7
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 2.5e-27 125.2 72 84.7
Carub.0006s0093 Capsella rubella HOM05D009057 ORTHO05D011698 8.8e-25 116.7 72 81.9
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 1.2e-24 116.3 61 90.2
Thhalv10015182m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 2.4e-22 108.6 74 73.0
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 1.3e-20 102.8 81 67.9
BcaNung04451 Brassica carinata HOM05D009057 ORTHO05D011698 8.5e-20 100.1 72 72.2
BcaB01g06211 Brassica carinata HOM05D009057 ORTHO05D011698 3.2e-19 98.2 75 69.3
BcaB01g06070 Brassica carinata HOM05D009057 ORTHO05D011698 1.6e-18 95.9 74 70.3
C03p00790 Brassica napus HOM05D009057 ORTHO05D011698 1.6e-18 95.9 74 70.3
BolC3t12642H Brassica oleracea HOM05D009057 ORTHO05D011698 1.6e-18 95.9 74 70.3
A10p33520 Brassica napus HOM05D000031 ORTHO05D001864 8.0e-18 93.6 61 78.7
A03p00520 Brassica napus HOM05D009057 ORTHO05D011698 1.4e-17 92.8 74 68.9
BraA03t09443Z Brassica rapa HOM05D009057 ORTHO05D011698 1.4e-17 92.8 74 68.9
BraA10t45382Z Brassica rapa HOM05D000031 ORTHO05D001864 6.8e-17 90.5 61 75.4
BraA04t17355Z Brassica rapa HOM05D009057 ORTHO05D011698 4.2e-11 71.2 46 82.6
C09p74410 Brassica napus HOM05D009057 ORTHO05D011698 7.2e-11 70.5 46 82.6
A01p14190 Brassica napus HOM05D009057 ORTHO05D011698 1.0e-09 66.6 45 71.1
A03p11190 Brassica napus HOM05D009057 ORTHO05D011698 1.4e-09 66.2 57 61.4
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.3e-09 65.5 85 45.9
A03p65000 Brassica napus HOM05D009057 ORTHO05D011698 4.0e-09 64.7 57 61.4
BraA03t15559Z Brassica rapa HOM05D009057 ORTHO05D011698 4.0e-09 64.7 57 61.4
A09p23580 Brassica napus HOM05D009057 ORTHO05D011698 5.2e-09 64.3 57 59.6
A09p44690 Brassica napus HOM05D009057 ORTHO05D011698 5.2e-09 64.3 31 96.8
BraA06t26621Z Brassica rapa HOM05D009057 ORTHO05D011698 2.0e-08 62.4 45 68.9
BraA01t00192Z Brassica rapa HOM05D009057 ORTHO05D011698 2.6e-08 62.0 45 68.9
BraA09t36710Z Brassica rapa HOM05D009057 ORTHO05D011698 2.6e-08 62.0 31 93.5
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 7.5e-08 60.5 74 51.4
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 7.5e-08 60.5 72 50.0
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 7.5e-08 60.5 85 47.1
C09p74430 Brassica napus HOM05D000031 ORTHO05D001864 1.3e-07 59.7 56 60.7
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.3e-07 59.7 77 48.1
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 2.8e-07 58.5 86 46.5
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.7e-07 58.2 78 46.2
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 3.7e-07 58.2 76 51.3
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.7e-07 58.2 86 51.2
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.7e-07 58.2 74 48.6
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.9e-07 57.8 86 52.3
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 8.3e-07 57.0 86 50.0
BcaNung04452 Brassica carinata HOM05D009057 ORTHO05D011698 1.1e-06 56.6 45 71.1
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 1.1e-06 56.6 76 50.0
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.4e-06 56.2 74 51.4
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.8e-06 55.8 62 53.2
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.8e-06 55.8 76 48.7
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.4e-06 55.5 73 49.3
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.4e-06 55.5 74 41.9
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 3.1e-06 55.1 82 42.7
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.4e-06 54.3 83 43.4
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 7.0e-06 53.9 85 45.9
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 9.2e-06 53.5 85 43.5
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 9.2e-06 53.5 73 49.3


User provided reference genes

Program Settings