Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.8e-114 416.0 217 100.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.1e-91 339.3 189 92.6
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.3e-90 335.9 189 92.1
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.0e-90 335.5 189 90.5
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 3.0e-90 335.5 202 86.6
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.0e-90 335.5 189 89.9
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 6.8e-90 334.3 189 89.9
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.4e-89 332.0 187 90.4
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 5.7e-89 331.3 189 89.9
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 5.7e-89 331.3 189 89.4
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.3e-88 330.1 185 91.9
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.9e-88 328.9 185 91.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 8.3e-88 327.4 198 86.9
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.0e-82 310.5 170 93.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.4e-82 310.1 186 86.0
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.4e-81 305.4 189 84.1
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 5.4e-79 298.1 189 81.5
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 6.6e-77 291.2 189 79.9
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.1e-67 259.6 185 70.3
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 8.1e-67 257.7 185 70.3
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 8.1e-67 257.7 185 70.3
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.1e-66 257.3 183 69.9
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.4e-66 256.9 185 70.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.8e-66 256.5 189 69.3
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.2e-65 253.8 188 67.6
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.5e-65 253.4 183 69.4
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 7.6e-65 251.1 187 67.4
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.7e-64 250.0 186 67.7
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.9e-64 249.2 183 67.8
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 3.8e-64 248.8 186 66.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.8e-64 248.8 186 67.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.9e-64 248.4 184 66.8
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.4e-64 248.1 183 67.2
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.9e-63 246.5 186 66.7
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.4e-63 246.1 185 66.5
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.1e-63 245.4 183 66.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 9.2e-63 244.2 186 65.1
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 2.1e-62 243.0 185 67.6
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.1e-62 243.0 185 65.9
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.1e-62 243.0 204 61.3
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.7e-62 242.7 185 67.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.7e-62 242.7 184 66.8
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.7e-62 242.7 185 65.9
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 4.6e-62 241.9 185 65.9
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.6e-62 241.9 184 66.8
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 6.0e-62 241.5 186 65.6
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.0e-62 241.5 195 63.1
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 6.0e-62 241.5 188 66.0
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 7.8e-62 241.1 182 65.4
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.0e-61 240.7 186 65.1
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.0e-61 240.7 185 64.9
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.3e-61 240.4 184 64.7
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.7e-61 240.0 184 65.8
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.7e-61 240.0 186 65.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.7e-61 240.0 186 65.1
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.0e-61 239.2 195 62.6
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 3.0e-61 239.2 183 63.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 3.0e-61 239.2 185 67.0
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 3.0e-61 239.2 186 64.5
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.0e-61 239.2 186 64.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 3.9e-61 238.8 183 67.2
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.9e-61 238.8 186 64.0
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 6.6e-61 238.0 184 65.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.6e-61 238.0 184 64.7
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 6.6e-61 238.0 184 65.2
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 6.6e-61 238.0 186 65.1
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.6e-61 237.7 186 63.4
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 8.6e-61 237.7 188 64.4
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 8.6e-61 237.7 184 66.8
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-60 236.9 186 64.5
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-60 236.5 195 62.1
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.5e-60 236.1 186 62.4
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 2.5e-60 236.1 195 63.1
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.5e-60 236.1 184 64.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.3e-60 235.7 191 63.9
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.3e-60 235.3 184 65.8
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 4.3e-60 235.3 180 63.3
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 4.3e-60 235.3 191 64.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 4.3e-60 235.3 194 62.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 4.3e-60 235.3 186 63.4
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 7.3e-60 234.6 187 63.6
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 7.3e-60 234.6 182 65.4
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.2e-59 233.8 183 65.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.2e-59 233.8 183 64.5
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.2e-59 233.8 195 61.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.1e-59 233.0 183 61.7
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.8e-59 232.6 180 63.3
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.8e-59 232.6 180 62.8
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 6.2e-59 231.5 184 63.6
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.1e-59 231.1 189 61.4
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 8.1e-59 231.1 183 63.4
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.1e-59 231.1 185 64.3
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 8.1e-59 231.1 195 62.1
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.4e-58 230.3 184 66.3
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.8e-58 229.9 195 60.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.8e-58 229.9 195 61.0
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.4e-58 229.6 184 64.7
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-58 229.2 204 59.3
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 4.0e-58 228.8 195 60.5
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 5.2e-58 228.4 186 61.3
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 5.2e-58 228.4 204 59.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 5.2e-58 228.4 192 61.5
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.2e-58 228.4 207 58.5
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 6.9e-58 228.0 184 64.7
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.9e-58 227.6 207 58.0
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.2e-57 227.3 177 63.8
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.4e-57 225.7 200 59.0
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 5.8e-57 224.9 172 66.3
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 5.8e-57 224.9 185 62.7
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 7.6e-57 224.6 210 57.1
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 7.6e-57 224.6 184 62.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.3e-56 223.8 195 60.0
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-56 223.4 171 64.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.9e-56 222.6 171 66.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 6.4e-56 221.5 184 62.0
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.1e-55 220.7 176 63.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.9e-55 219.9 177 61.6
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.1e-54 216.5 184 62.0
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 7.3e-52 208.0 187 57.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.1e-51 206.5 185 56.8
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 2.4e-50 203.0 182 57.1
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 4.0e-50 202.2 186 55.9
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.2e-49 200.7 258 44.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.5e-49 198.7 186 57.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.9e-48 195.3 161 62.1
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 4.9e-48 195.3 184 53.3
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 6.4e-48 194.9 148 64.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.4e-47 193.0 189 52.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.2e-46 190.7 132 69.7
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.1e-46 189.9 169 57.4
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.7e-46 189.5 179 53.1
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.3e-45 186.4 140 65.0
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.6e-43 179.1 98 92.9
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.6e-43 179.1 195 51.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.4e-42 177.2 137 63.5
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.0e-42 175.6 126 67.5
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.0e-42 175.6 202 47.0
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.2e-40 169.9 186 51.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 3.8e-40 169.1 116 71.6
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 5.5e-39 165.2 145 55.2
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-38 164.1 136 60.3
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.3e-37 160.6 185 47.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.8e-37 160.2 116 63.8
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.0e-37 159.5 110 69.1
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.1e-37 158.7 149 57.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.5e-36 157.1 150 52.0
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.3e-36 155.6 109 67.9
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.4e-34 150.6 147 53.1
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 2.5e-31 139.8 106 66.0
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.7e-30 136.3 189 41.3
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 5.7e-28 128.6 113 59.3
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.1e-26 122.5 160 48.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.5e-17 94.0 74 60.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-15 86.7 81 55.6
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 2.3e-13 80.1 81 51.9
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.1e-13 79.0 45 82.2
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.3e-12 76.3 78 48.7
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.4e-10 70.9 68 50.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-08 64.7 52 57.7
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.2e-08 63.5 62 53.2
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.2e-08 63.5 62 53.2
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.9e-08 63.2 77 45.5
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 7.9e-06 55.1 40 62.5


User provided reference genes

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