Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 9.4e-102 373.6 201 100.0
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.5e-80 301.6 191 82.7
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.4e-68 263.5 191 72.8
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.4e-51 205.7 193 54.4
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.9e-49 199.9 188 55.9
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.7e-48 196.1 193 52.8
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 6.0e-48 194.9 193 52.3
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 3.0e-47 192.6 193 52.8
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.9e-46 189.9 193 50.8
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 7.3e-46 188.0 194 51.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 1.4e-44 183.7 171 60.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 2.3e-39 166.4 193 45.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 2.8e-37 159.5 188 43.6
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 2.8e-37 159.5 188 43.6
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 1.1e-36 157.5 193 43.5
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 4.0e-36 155.6 198 39.9
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 6.8e-36 154.8 197 43.1
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.5e-35 153.7 198 43.4
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 2.6e-35 152.9 188 43.1
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 4.4e-35 152.1 197 42.1
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 7.5e-35 151.4 197 41.6
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 3.7e-34 149.1 197 41.6
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 2.4e-33 146.4 197 42.1
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.4e-33 146.4 187 39.0
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.2e-32 144.1 187 41.2
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.5e-32 142.5 197 39.6
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.7e-31 140.2 183 38.3
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 3.0e-31 139.4 182 40.7
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 5.1e-31 138.7 189 40.2
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 6.6e-31 138.3 187 40.6
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.1e-30 137.5 187 36.9
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.5e-30 137.1 186 39.8
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.5e-30 137.1 185 37.3
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.9e-30 136.7 197 37.1
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 2.5e-30 136.3 186 35.5
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.3e-30 135.6 187 36.4
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 5.6e-30 135.2 189 38.6
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 7.3e-30 134.8 185 36.2
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 9.5e-30 134.4 197 37.1
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 9.5e-30 134.4 197 38.1
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-29 134.0 197 38.1
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-29 134.0 197 38.1
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.6e-29 133.7 185 37.3
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.6e-29 133.7 188 38.8
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 2.8e-29 132.9 179 37.4
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.8e-29 132.9 182 37.9
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 3.6e-29 132.5 187 36.4
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.1e-29 131.3 197 37.1
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.1e-29 131.3 187 38.0
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 8.1e-29 131.3 192 35.4
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.8e-28 130.2 193 36.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 3.1e-28 129.4 188 38.3
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.5e-27 127.1 187 35.3
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.0e-27 126.7 198 36.9
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 9.9e-27 124.4 189 33.9
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 2.2e-26 123.2 178 42.7
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.9e-26 122.9 191 35.6
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 3.2e-25 119.4 199 36.2
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.2e-24 117.5 187 36.4
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.6e-24 117.1 197 34.5
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.3e-23 114.0 185 30.8
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.9e-22 110.2 187 35.3
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 5.6e-22 108.6 184 32.1
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.6e-22 108.6 188 30.9
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 1.2e-21 107.5 213 32.4
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 5.3e-20 102.1 188 31.4
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 2.0e-19 100.1 134 41.0
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 2.0e-19 100.1 134 41.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 4.4e-19 99.0 186 32.3
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.2e-16 90.9 103 43.7
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 2.1e-16 90.1 182 31.9
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.1e-16 90.1 160 31.9
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 2.3e-15 86.7 269 25.7
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 6.6e-15 85.1 179 27.9
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.1e-14 84.3 96 43.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.9e-14 83.6 107 42.1
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.3e-13 80.9 141 34.0
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.1e-13 80.1 89 44.9
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 2.8e-13 79.7 192 27.6
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 8.1e-13 78.2 189 27.0
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 8.1e-13 78.2 107 38.3
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.1e-12 77.8 104 41.3
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.4e-12 77.4 102 41.2
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.8e-12 77.0 107 41.1
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 2.4e-12 76.6 103 42.7
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.1e-12 76.3 85 43.5
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 4.0e-12 75.9 103 41.7
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 1.2e-11 74.3 103 38.8
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 1.2e-11 74.3 103 37.9
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.2e-11 74.3 77 44.2
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.6e-11 73.2 85 41.2
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 3.4e-11 72.8 189 24.9
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.5e-11 72.4 189 25.4
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 4.5e-11 72.4 143 30.1
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 5.8e-11 72.0 99 38.4
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 7.6e-11 71.6 105 39.0
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.2e-10 70.1 88 43.2
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 3.8e-10 69.3 99 39.4
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 4.9e-10 68.9 107 38.3
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 8.4e-10 68.2 97 39.2
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.1e-09 67.8 87 41.4
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.9e-09 67.0 103 35.9
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.2e-09 65.9 97 34.0
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.2e-09 65.9 107 38.3
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.1e-09 65.1 107 35.5
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.1e-09 65.1 78 35.9
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.1e-09 65.1 97 34.0
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 9.3e-09 64.7 107 35.5
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 1.2e-08 64.3 103 33.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.2e-08 64.3 107 36.4
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 1.2e-08 64.3 68 44.1
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 2.1e-08 63.5 153 28.1
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.7e-08 63.2 107 35.5
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.7e-08 63.2 97 33.0
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.5e-08 62.8 78 34.6
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 3.5e-08 62.8 55 54.5
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.0e-07 61.2 79 38.0
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.0e-07 61.2 78 33.3
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.0e-07 61.2 107 33.6
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.3e-07 60.8 78 34.6
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.3e-07 60.8 55 49.1
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.3e-07 60.8 107 33.6
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 2.3e-07 60.1 189 25.9
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 3.9e-07 59.3 79 36.7
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 5.1e-07 58.9 89 29.2
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 5.1e-07 58.9 64 46.9
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 5.1e-07 58.9 54 50.0
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 6.7e-07 58.5 55 47.3
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.7e-07 58.5 122 28.7
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 6.7e-07 58.5 65 41.5
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 8.7e-07 58.2 97 33.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.1e-06 57.8 99 28.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.1e-06 57.8 51 49.0
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.1e-06 57.8 51 49.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.5e-06 57.4 78 35.9
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 1.9e-06 57.0 97 33.0
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.9e-06 57.0 56 42.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 5.6e-06 55.5 55 52.7
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-06 55.5 54 44.4
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 7.4e-06 55.1 99 31.3
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 9.6e-06 54.7 49 53.1
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 9.6e-06 54.7 108 30.6


User provided reference genes

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