Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G01225 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 1.3e-67 259.6 135 100.0
AL6G10960 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 4.6e-44 181.4 152 71.1
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 1.1e-37 160.2 135 69.6
Thhalv10014915m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 4.3e-34 148.3 153 62.1
Carub.0006s0066 Capsella rubella HOM05D004233 ORTHO05D003507 2.1e-33 146.0 148 64.9
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 6.9e-32 141.0 138 62.3
Sp6g40580 Schrenkiella parvula HOM05D004233 ORTHO05D003507 4.4e-31 138.3 148 57.4
CARHR083380 Cardamine hirsuta HOM05D004233 ORTHO05D003507 1.7e-30 136.3 143 58.0
AL3G20070 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 2.2e-30 136.0 143 58.7
THA.LOC104816214 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.1e-29 133.7 141 58.2
Sp3g07460 Schrenkiella parvula HOM05D004233 ORTHO05D003507 2.4e-29 132.5 140 57.9
Carub.0003s0817 Capsella rubella HOM05D004233 ORTHO05D003507 3.2e-29 132.1 142 57.7
Thhalv10022307m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 5.4e-29 131.3 138 58.0
AT3G09032 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 1.2e-28 130.2 145 55.2
BcaNung07269 Brassica carinata HOM05D004233 ORTHO05D003507 2.1e-28 129.4 145 56.6
A05p39820 Brassica napus HOM05D004233 ORTHO05D003507 1.7e-27 126.3 137 57.7
BraA05t22766Z Brassica rapa HOM05D004233 ORTHO05D003507 1.7e-27 126.3 137 57.7
THA.LOC104827043 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 2.3e-27 125.9 136 59.6
A10p33670 Brassica napus HOM05D004233 ORTHO05D003507 1.5e-26 123.2 149 53.7
BraA10t45398Z Brassica rapa HOM05D004233 ORTHO05D003507 4.3e-26 121.7 151 53.0
BraA01t04320Z Brassica rapa HOM05D004233 ORTHO05D003507 7.3e-26 120.9 140 52.9
BcaC09g48049 Brassica carinata HOM05D004233 ORTHO05D003507 2.1e-25 119.4 140 52.1
BolC1t05478H Brassica oleracea HOM05D004233 ORTHO05D003507 4.8e-25 118.2 140 52.1
BcaC05g29637 Brassica carinata HOM05D004233 ORTHO05D003507 1.4e-24 116.7 137 54.0
BcaNung06802 Brassica carinata HOM05D004233 ORTHO05D003507 3.1e-24 115.5 146 52.7
C09p74580 Brassica napus HOM05D004233 ORTHO05D003507 3.1e-24 115.5 146 52.7
BolC9t60190H Brassica oleracea HOM05D004233 ORTHO05D003507 3.1e-24 115.5 146 52.7
C05p58860 Brassica napus HOM05D004233 ORTHO05D003507 7.6e-23 110.9 137 52.6
BolC5t34538H Brassica oleracea HOM05D004233 ORTHO05D003507 7.6e-23 110.9 137 52.6
BcaC09g48004 Brassica carinata HOM05D004233 ORTHO05D003507 8.4e-22 107.5 141 49.6
BcaC06g31968 Brassica carinata HOM05D004233 ORTHO05D003507 7.1e-21 104.4 159 50.3
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 1.6e-20 103.2 137 52.6
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 6.0e-20 101.3 138 50.0
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 1.5e-18 96.7 137 51.8
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 4.3e-18 95.1 138 47.8
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 7.4e-18 94.4 135 53.3
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 2.8e-17 92.4 140 49.3
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 4.8e-17 91.7 133 50.4
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.4e-16 90.1 142 50.7
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.4e-16 90.1 142 52.1
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.4e-16 90.1 142 52.1
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.9e-16 87.8 141 47.5
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 1.5e-15 86.7 134 44.0
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 4.5e-15 85.1 138 49.3
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 7.6e-15 84.3 142 45.8
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 1.7e-14 83.2 133 47.4
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 2.2e-14 82.8 125 48.8
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 2.9e-14 82.4 135 43.0
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 4.9e-14 81.6 138 46.4
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 8.4e-14 80.9 133 44.4
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 1.1e-13 80.5 136 44.9
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 1.9e-13 79.7 134 41.8
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.4e-13 79.3 133 45.1
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 9.3e-13 77.4 132 46.2
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 1.6e-12 76.6 131 44.3
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 1.6e-12 76.6 131 35.1
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 2.1e-12 76.3 141 42.6
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 4.6e-12 75.1 135 39.3
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 7.9e-12 74.3 106 51.9
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-11 72.4 97 48.5
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.0e-11 72.4 97 48.5
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 5.1e-11 71.6 134 41.8
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.9e-10 69.7 97 47.4
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.9e-10 69.7 136 42.6
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 2.5e-10 69.3 140 38.6
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 2.5e-10 69.3 137 38.7
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 4.3e-10 68.6 137 38.0
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 4.3e-10 68.6 125 42.4
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 4.3e-10 68.6 131 42.0
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 7.4e-10 67.8 137 39.4
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 2.1e-09 66.2 139 39.6
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 2.8e-09 65.9 132 36.4
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.2e-09 64.7 108 47.2
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 6.2e-09 64.7 108 47.2
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.1e-08 63.9 141 43.3
FAN05G3657 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.4e-08 63.5 138 34.8
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.4e-08 63.5 132 34.8
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 1.8e-08 63.2 132 31.8
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.4e-08 62.8 107 43.0
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 5.3e-08 61.6 107 39.3
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.3e-08 61.6 133 39.1
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 5.3e-08 61.6 132 37.9
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 6.9e-08 61.2 141 36.2
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 6.9e-08 61.2 141 36.2
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 6.9e-08 61.2 141 36.2
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 6.9e-08 61.2 141 36.2
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 1.2e-07 60.5 129 36.4
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.5e-07 60.1 141 35.5
Glyma.13G239800 Glycine max HOM05D004233 ORTHO05D003507 1.5e-07 60.1 126 39.7
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 2.0e-07 59.7 132 38.6
Glyma.15G073400 Glycine max HOM05D004233 ORTHO05D003507 3.4e-07 58.9 126 40.5
ClCG04G007170 Citrullus lanatus HOM05D004233 ORTHO05D003507 4.5e-07 58.5 119 34.5
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 5.8e-07 58.2 136 34.6
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 1.0e-06 57.4 137 30.7
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.0e-06 57.4 138 36.2
MELO3C003231.2 Cucumis melo HOM05D004233 ORTHO05D003507 1.3e-06 57.0 123 32.5
CsaV3_4G026060 Cucumis sativus L. HOM05D004233 ORTHO05D003507 1.3e-06 57.0 124 33.9
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 1.3e-06 57.0 121 37.2
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 2.2e-06 56.2 132 33.3
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 2.9e-06 55.8 132 34.1
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 2.9e-06 55.8 132 34.1
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 2.9e-06 55.8 134 39.6
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 2.9e-06 55.8 104 35.6
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 2.9e-06 55.8 140 32.1
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 4.9e-06 55.1 82 42.7
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 4.9e-06 55.1 82 42.7
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 4.9e-06 55.1 82 42.7
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 4.9e-06 55.1 132 33.3
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 4.9e-06 55.1 134 37.3
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 4.9e-06 55.1 135 36.3
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 4.9e-06 55.1 142 38.0
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 8.4e-06 54.3 78 43.6
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 8.4e-06 54.3 128 37.5


User provided reference genes

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