Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.3e-36 156.0 82 100.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.9e-25 117.5 81 81.5
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 2.4e-24 115.2 82 79.3
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 1.8e-22 109.0 83 77.1
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 6.2e-20 100.5 82 72.0
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 6.2e-20 100.5 82 72.0
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 8.1e-20 100.1 82 73.2
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 3.1e-19 98.2 82 70.7
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 3.1e-19 98.2 82 70.7
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 6.9e-19 97.1 82 70.7
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 3.2e-16 88.2 77 66.2
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 5.5e-16 87.4 77 63.6
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 1.6e-15 85.9 78 62.8
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 2.7e-15 85.1 68 66.2
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 7.9e-15 83.6 66 66.7
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 3.3e-13 78.2 88 54.5
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 3.3e-13 78.2 88 54.5
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.7e-12 74.7 45 75.6
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.7e-12 74.7 45 75.6
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 3.7e-12 74.7 45 75.6
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.8e-11 72.4 63 61.9
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.4e-11 72.0 67 56.7
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 3.1e-11 71.6 62 62.9
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 6.9e-11 70.5 54 66.7
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 6.9e-11 70.5 54 66.7
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 9.0e-11 70.1 86 59.3
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 9.0e-11 70.1 54 64.8
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.0e-10 68.9 51 66.7
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 2.6e-10 68.6 55 63.6
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.4e-10 68.2 58 62.1
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.5e-10 67.8 55 61.8
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 4.5e-10 67.8 54 59.3
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 7.6e-10 67.0 47 68.1
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.6e-10 67.0 59 57.6
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.6e-10 67.0 59 57.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 7.6e-10 67.0 54 61.1
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 7.6e-10 67.0 54 61.1
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.3e-09 66.2 52 65.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.3e-09 66.2 41 73.2
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.7e-09 65.9 57 59.6
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.9e-09 65.1 54 59.3
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.9e-09 65.1 47 63.8
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.0e-09 64.3 52 61.5
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 5.0e-09 64.3 52 61.5
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.0e-09 64.3 48 64.6
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 5.0e-09 64.3 50 64.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 6.5e-09 63.9 62 54.8
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.5e-09 63.9 51 64.7
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.5e-09 63.9 41 73.2
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.5e-09 63.9 58 58.6
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 6.5e-09 63.9 49 63.3
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 8.4e-09 63.5 43 67.4
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 8.4e-09 63.5 46 65.2
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 8.4e-09 63.5 46 65.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 8.4e-09 63.5 47 70.2
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-08 63.2 52 59.6
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.1e-08 63.2 57 57.9
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.1e-08 63.2 61 52.5
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.4e-08 62.8 48 60.4
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.4e-08 62.8 48 60.4
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.4e-08 62.8 48 62.5
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.4e-08 62.8 46 67.4
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.4e-08 62.8 50 60.0
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.4e-08 62.8 41 70.7
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.5e-08 62.0 67 53.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.5e-08 62.0 54 55.6
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.2e-08 61.6 48 58.3
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 4.2e-08 61.2 61 52.5
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 4.2e-08 61.2 63 54.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.5e-08 60.8 66 53.0
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 5.5e-08 60.8 43 69.8
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 5.5e-08 60.8 51 64.7
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 5.5e-08 60.8 53 62.3
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 7.1e-08 60.5 52 63.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 9.3e-08 60.1 53 58.5
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 9.3e-08 60.1 63 49.2
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 9.3e-08 60.1 42 64.3
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.3e-08 60.1 52 61.5
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.3e-08 60.1 52 61.5
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.3e-08 60.1 52 57.7
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 9.3e-08 60.1 53 60.4
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 9.3e-08 60.1 52 57.7
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 9.3e-08 60.1 51 62.7
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.2e-07 59.7 63 50.8
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.2e-07 59.7 52 63.5
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.6e-07 59.3 53 64.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.1e-07 58.9 53 52.8
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.1e-07 58.9 51 56.9
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.1e-07 58.9 57 57.9
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 2.7e-07 58.5 46 63.0
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.7e-07 58.5 48 62.5
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.7e-07 58.5 52 61.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 2.7e-07 58.5 46 65.2
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.7e-07 58.5 42 61.9
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.5e-07 58.2 60 50.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.5e-07 58.2 42 59.5
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 4.6e-07 57.8 60 51.7
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.6e-07 57.8 44 61.4
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 4.6e-07 57.8 49 59.2
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 4.6e-07 57.8 45 55.6
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 6.1e-07 57.4 48 56.2
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 6.1e-07 57.4 49 59.2
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.0e-06 56.6 53 56.6
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.0e-06 56.6 41 58.5
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.0e-06 56.6 48 62.5
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.0e-06 56.6 48 62.5
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.0e-06 56.6 47 63.8
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.3e-06 56.2 51 62.7
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-06 56.2 66 47.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.8e-06 55.8 52 55.8
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 2.3e-06 55.5 56 57.1
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.3e-06 55.5 52 59.6
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.3e-06 55.5 59 50.8
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 2.3e-06 55.5 57 49.1
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.0e-06 55.1 52 59.6
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.9e-06 54.7 49 63.3
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.9e-06 54.7 42 54.8
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 3.9e-06 54.7 45 57.8
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.1e-06 54.3 54 53.7
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 5.1e-06 54.3 45 57.8
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 5.1e-06 54.3 50 58.0
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 6.7e-06 53.9 51 56.9
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 6.7e-06 53.9 43 65.1
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 6.7e-06 53.9 44 56.8
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.7e-06 53.5 54 51.9
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 8.7e-06 53.5 42 54.8


User provided reference genes

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