Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.5e-250 867.5 439 100.0
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 7.0e-243 843.6 439 97.9
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.3e-233 812.8 432 94.2
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 3.6e-231 804.7 430 94.0
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.0e-230 803.1 430 93.5
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.8e-230 802.4 430 93.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 6.6e-225 783.9 430 91.9
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.4e-219 766.1 435 89.0
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 2.0e-218 762.3 480 81.7
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.0e-218 762.3 472 83.5
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 5.0e-217 757.7 415 91.1
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.2e-213 746.5 415 89.6
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.4e-213 745.0 479 80.8
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 4.0e-206 721.5 440 82.3
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.9e-187 659.4 429 75.8
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.1e-186 656.0 433 74.6
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 6.6e-185 651.0 429 74.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 7.3e-184 647.5 430 74.0
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 9.6e-184 647.1 429 74.4
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.2e-183 646.7 430 74.9
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 5.3e-182 641.3 430 72.8
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 6.9e-182 641.0 429 73.7
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.5e-181 639.8 430 73.3
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 3.4e-181 638.6 430 73.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 4.4e-181 638.3 429 73.2
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.4e-179 632.5 430 71.4
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 3.2e-179 632.1 430 72.3
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.2e-179 632.1 430 72.1
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 4.2e-179 631.7 430 70.7
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 7.1e-179 630.9 430 71.6
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 7.1e-179 630.9 429 71.3
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.7e-178 629.0 430 70.5
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.5e-178 628.6 430 70.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 4.6e-178 628.2 430 72.8
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.0e-177 627.1 430 70.9
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.7e-177 626.3 430 70.9
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.7e-177 626.3 430 72.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 3.9e-177 625.2 430 70.5
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 5.1e-177 624.8 430 72.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.5e-176 623.2 430 70.5
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 4.3e-176 621.7 430 70.5
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.6e-175 619.8 432 70.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.6e-175 619.8 430 69.5
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.6e-175 618.6 430 70.2
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 8.1e-175 617.5 429 69.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 8.1e-175 617.5 458 69.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.4e-174 615.9 431 70.5
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 5.3e-174 614.8 430 69.5
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 6.9e-174 614.4 430 69.5
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.5e-173 613.2 435 68.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.5e-173 611.7 433 69.3
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 4.5e-173 611.7 430 68.8
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.2e-172 609.4 429 69.5
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 3.8e-172 608.6 431 68.4
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.4e-171 605.9 431 69.1
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 4.2e-171 605.1 431 69.8
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-170 603.6 433 69.1
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 1.6e-170 603.2 435 69.0
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.7e-170 602.4 432 70.1
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-170 602.1 436 68.8
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.0e-169 600.5 430 68.6
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.8e-169 599.7 432 68.8
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 3.0e-169 599.0 430 68.1
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 3.0e-169 599.0 430 68.8
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.9e-169 598.6 430 68.4
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 8.7e-169 597.4 468 65.2
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.1e-168 597.0 430 68.8
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.5e-168 595.9 431 68.0
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 4.3e-168 595.1 429 68.3
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.6e-167 593.2 430 68.1
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.2e-165 587.0 429 66.7
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.6e-165 585.9 430 67.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.2e-164 582.8 428 67.5
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 4.2e-163 578.6 434 67.1
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 3.0e-161 572.4 435 66.0
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 6.7e-161 571.2 435 66.2
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.5e-160 570.1 339 86.7
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.9e-160 569.7 436 65.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.6e-159 566.6 510 58.4
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 5.3e-158 561.6 520 56.5
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 9.0e-158 560.8 435 63.9
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.8e-156 555.4 430 65.3
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 4.2e-155 552.0 430 64.9
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.2e-155 552.0 430 64.9
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 6.1e-154 548.1 439 64.0
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.9e-153 545.4 341 83.0
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.5e-152 543.5 364 73.6
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.8e-150 536.6 449 61.2
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.2e-149 533.9 430 63.3
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.5e-147 526.2 435 62.8
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.2e-146 523.9 421 62.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 8.8e-145 517.7 380 67.6
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.3e-144 515.8 380 67.4
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.1e-142 510.8 379 66.8
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 3.1e-142 509.2 420 63.1
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.3e-142 508.4 362 70.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 7.7e-141 504.6 376 66.8
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.5e-136 490.3 448 58.9
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 5.7e-136 488.4 362 67.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.7e-135 486.9 726 40.6
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 4.5e-133 478.8 434 58.3
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.0e-124 451.1 436 52.1
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 5.0e-124 448.7 692 40.9
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 7.2e-123 444.9 436 50.7
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.4e-118 429.9 316 68.0
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 7.0e-118 428.3 298 71.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 3.2e-115 419.5 437 48.1
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 7.5e-112 408.3 435 49.2
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.5e-107 394.0 283 68.6
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.3e-100 370.2 350 53.1
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 2.8e-90 336.7 221 74.2
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.9e-79 300.1 247 63.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.4e-78 297.7 219 68.0
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-65 254.6 231 60.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.4e-64 250.0 161 77.0
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.0e-60 238.4 413 35.1
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-59 235.0 283 47.3
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-57 228.0 215 58.1
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.2e-56 224.9 159 69.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.5e-53 213.4 430 36.0
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-52 211.5 134 79.1
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.0e-52 210.3 131 74.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.3e-47 194.9 200 57.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.8e-47 193.4 193 58.5
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.5e-43 181.4 142 62.0
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.0e-40 171.0 140 60.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.7e-36 155.6 149 51.0
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.1e-35 155.2 317 32.5
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.1e-25 119.0 120 50.8
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-22 111.3 146 47.9
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.5e-22 110.9 54 90.7
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.7e-21 107.5 94 56.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 2.8e-18 97.4 54 88.9
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.0e-16 91.3 79 54.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 5.9e-16 89.7 73 60.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 6.5e-15 86.3 73 58.9
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.5e-14 85.1 73 58.9
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.3e-10 72.0 43 76.7
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.7e-10 70.5 85 40.0
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.2e-08 65.5 72 48.6
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 8.5e-07 59.3 37 73.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.5e-06 58.5 46 54.3


User provided reference genes

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