Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.9e-111 406.0 221 100.0
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.1e-98 363.6 234 86.3
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.5e-84 316.6 237 75.9
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.1e-78 294.7 237 73.8
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.2e-75 286.2 236 64.8
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 5.0e-72 275.0 242 65.3
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 8.8e-69 264.2 236 63.6
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.3e-67 258.1 227 72.7
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.9e-63 246.5 232 62.1
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 4.2e-63 245.4 227 62.6
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 4.7e-62 241.9 237 59.9
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 6.7e-61 238.0 227 61.2
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.4e-58 230.3 231 59.3
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.6e-57 226.9 240 58.3
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 4.7e-54 215.3 227 57.3
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.1e-50 204.1 216 62.5
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.8e-48 195.7 237 48.1
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 3.2e-47 192.6 230 45.2
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 5.5e-47 191.8 229 47.6
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.1e-46 189.9 237 47.3
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 4.7e-46 188.7 231 46.3
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.7e-46 188.7 237 46.8
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.3e-45 186.4 237 46.4
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.0e-44 183.3 237 46.4
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 4.4e-44 182.2 201 49.8
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.7e-44 181.8 239 47.3
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 2.2e-43 179.9 238 46.2
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 2.0e-41 173.3 232 43.5
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 2.0e-41 173.3 232 44.0
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.7e-41 172.9 236 47.0
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 2.7e-41 172.9 231 42.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 7.7e-41 171.4 232 45.7
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.0e-40 171.0 238 45.4
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.3e-40 170.6 232 44.4
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.0e-40 168.7 232 45.3
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 5.0e-40 168.7 232 44.0
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 8.6e-40 167.9 263 41.4
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.5e-39 167.2 231 44.2
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 3.3e-39 166.0 234 42.7
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 9.5e-39 164.5 235 42.6
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.2e-38 164.1 234 45.3
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.2e-38 164.1 223 46.2
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 2.1e-38 163.3 214 43.9
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.8e-38 162.9 237 43.0
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 2.8e-38 162.9 226 44.2
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.7e-38 162.2 235 45.5
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 6.1e-38 161.8 212 44.8
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.1e-38 161.8 232 42.7
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.0e-38 161.4 233 42.9
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.0e-37 161.0 236 43.2
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.0e-37 161.0 231 45.0
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.0e-37 161.0 228 41.7
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.8e-37 160.2 228 41.2
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.8e-37 160.2 235 43.4
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 2.3e-37 159.8 232 43.1
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.3e-37 159.8 233 42.9
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 3.0e-37 159.5 233 43.3
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.0e-37 159.1 234 41.9
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-36 157.5 228 40.4
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-36 157.5 228 40.4
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.2e-36 157.5 168 49.4
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.6e-36 156.4 223 41.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.6e-36 156.4 247 42.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.4e-36 156.0 197 44.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.4e-36 156.0 237 43.0
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 3.4e-36 156.0 285 37.2
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.4e-36 155.6 197 44.2
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.4e-36 155.6 231 42.9
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.5e-36 154.8 202 42.1
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.5e-36 154.8 202 42.1
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 7.5e-36 154.8 238 42.4
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.3e-35 154.1 235 42.1
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.3e-35 154.1 221 43.0
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.3e-35 154.1 221 42.5
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.7e-35 152.5 224 46.0
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 6.4e-35 151.8 221 38.9
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 8.3e-35 151.4 256 40.2
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 8.3e-35 151.4 236 42.4
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 8.3e-35 151.4 238 39.1
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-34 151.0 225 40.4
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.1e-34 151.0 237 40.1
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.4e-34 150.6 230 42.2
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.4e-34 150.6 224 42.9
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.4e-34 149.8 218 43.6
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.1e-34 149.1 253 39.5
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.1e-34 149.1 228 39.0
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 4.1e-34 149.1 239 41.4
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 7.0e-34 148.3 229 41.9
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 9.2e-34 147.9 220 39.1
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.6e-33 147.1 229 41.5
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.0e-33 146.7 233 41.2
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.0e-33 146.7 234 38.0
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 5.9e-33 145.2 219 42.5
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-32 144.4 216 41.7
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-32 143.7 216 41.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.0e-32 142.9 216 47.2
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 5.0e-32 142.1 218 41.3
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-31 141.0 218 40.8
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.5e-31 139.8 220 42.3
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 3.3e-31 139.4 231 41.1
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 5.6e-31 138.7 190 43.7
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 7.3e-31 138.3 227 38.3
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 9.5e-31 137.9 197 42.6
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-30 137.1 217 45.6
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.1e-30 136.7 244 37.3
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.1e-30 136.7 190 41.6
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 6.2e-30 135.2 223 39.5
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 6.8e-29 131.7 198 44.9
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-28 130.6 190 41.1
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 5.8e-28 128.6 223 40.8
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.7e-27 127.1 235 43.8
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 2.2e-27 126.7 228 37.3
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 6.4e-27 125.2 219 39.7
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.9e-26 123.6 155 42.6
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.0e-26 121.7 218 42.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.0e-25 120.2 185 41.1
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.5e-25 119.4 234 34.6
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-24 117.5 214 35.5
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-24 117.1 184 38.6
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 3.9e-24 115.9 219 37.4
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 6.6e-24 115.2 236 35.2
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.6e-24 115.2 158 41.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 2.5e-23 113.2 232 37.5
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 7.3e-23 111.7 118 53.4
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 4.7e-22 109.0 225 35.1
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-21 107.8 154 44.2
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.5e-20 104.0 203 36.9
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 5.8e-20 102.1 159 44.0
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 4.9e-19 99.0 78 65.4
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.4e-18 96.7 91 58.2
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 7.1e-18 95.1 170 41.2
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.6e-17 94.0 169 35.5
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.0e-17 92.0 154 42.9
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 7.8e-17 91.7 225 32.4
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 1.7e-16 90.5 111 53.2
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 7.3e-15 85.1 168 36.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.1e-14 83.6 172 35.5
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 2.1e-14 83.6 238 35.7
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 2.9e-11 73.2 68 57.4
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 3.8e-11 72.8 140 33.6
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-10 70.5 123 34.1
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.2e-09 67.8 111 40.5
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.1e-09 67.0 132 38.6
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.8e-09 65.1 33 90.9
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.8e-09 65.1 33 90.9
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 3.0e-08 63.2 133 31.6
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 5.1e-08 62.4 133 30.8
A01p00530 Brassica napus HOM05D004487 ORTHO05D032747 1.1e-07 61.2 74 50.0
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.6e-06 57.4 103 35.0
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-06 56.6 85 34.1
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-06 56.6 69 43.5


User provided reference genes

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