Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 6300.3 3185 100.0
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 5932.4 3189 94.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 5702.1 3198 90.6
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 5573.8 3200 88.8
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 5541.5 3188 88.4
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 5467.5 3197 87.3
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 5385.8 3190 86.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 5385.1 3190 86.2
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 5382.0 3192 86.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 5378.5 3194 86.1
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 5139.7 3255 81.2
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 4481.0 3204 73.2
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3650.1 3259 60.3
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3647.8 3243 60.5
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3632.8 3279 59.7
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3627.4 3255 60.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3606.2 3224 60.4
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3589.7 3245 59.7
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3588.9 3255 59.5
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3579.3 3243 59.5
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3579.3 3245 60.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3524.2 3257 59.1
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3522.6 3261 59.0
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3516.9 3261 58.7
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3513.0 3268 58.8
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3506.1 3309 58.4
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3501.1 3259 58.4
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3499.9 3282 58.2
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3495.3 3259 58.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3488.7 3261 58.8
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3479.1 3259 58.1
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3474.9 3262 58.2
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3468.7 3277 57.7
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3448.7 3253 58.2
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3392.4 3238 56.9
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3392.4 3234 57.5
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3374.7 3286 56.4
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3369.7 3261 57.0
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3349.3 3250 56.4
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3343.9 3256 56.4
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3342.7 3250 56.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3339.3 3249 56.5
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3333.1 3244 56.7
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3309.6 3256 56.0
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3308.9 3253 56.0
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3302.7 3247 56.3
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3299.6 3268 56.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3264.6 3262 55.6
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3242.6 3382 53.4
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3237.6 3254 55.2
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3214.5 3289 54.3
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3207.9 3277 54.3
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3200.6 3269 54.5
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3189.1 2886 59.4
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3172.1 3276 53.6
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3167.9 3291 54.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3160.2 3281 53.7
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3159.0 3308 54.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3151.3 3291 53.9
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3130.5 3261 54.3
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3129.7 3254 53.8
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3105.1 3219 53.7
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3088.5 3258 52.9
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3081.6 3129 54.3
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3078.5 3266 52.9
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3075.0 3273 53.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3071.6 3254 53.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3029.6 3295 52.1
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3009.6 3213 52.6
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2920.2 3012 54.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2842.8 2707 57.0
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2781.1 2433 60.7
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2718.7 3085 51.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2697.9 3249 49.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2611.6 2995 50.8
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2605.9 3254 47.0
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2586.6 2020 67.2
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2397.1 3125 46.2
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2350.9 2447 52.6
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2146.7 2567 48.6
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2112.0 1602 69.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2067.0 1694 64.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2049.2 3180 41.1
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2040.8 1986 56.5
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1910.6 2412 46.9
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1898.2 2821 42.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1889.4 1507 67.0
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1884.4 3286 37.9
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1878.6 1470 67.8
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1861.7 2441 45.7
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1838.9 3290 37.5
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1796.2 1797 56.6
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1773.8 1441 65.9
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1736.1 3143 37.3
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1468.0 1005 75.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1400.6 2147 40.8
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1291.2 1243 56.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1242.6 1738 42.3
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1224.2 1552 47.4
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1168.7 1006 62.8
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1148.3 970 62.2
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1147.1 843 70.2
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1122.1 1536 43.4
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1078.9 836 67.6
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.8e-293 1013.1 952 59.2
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.6e-288 998.0 3357 27.5
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.3e-285 988.4 1137 52.2
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.2e-285 985.7 855 61.4
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.3e-274 951.8 1495 40.6
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.5e-265 921.0 885 55.6
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 2.3e-255 887.9 1500 38.4
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 9.3e-228 796.2 752 57.0
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.9e-225 788.5 1300 39.5
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 4.8e-200 704.1 414 85.5
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.2e-195 689.5 441 78.9
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 4.4e-153 548.1 806 41.9
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.1e-151 541.6 822 39.7
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.1e-143 515.0 836 38.2
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.6e-139 503.1 678 44.2
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.5e-132 479.2 922 34.8
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.5e-124 453.4 327 69.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 5.2e-122 444.9 446 52.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.4e-119 434.9 250 85.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 3.5e-118 432.2 270 79.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 8.1e-115 421.0 412 57.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.5e-108 400.2 529 47.4
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 3.2e-103 382.5 819 32.7
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 4.6e-102 378.6 820 33.9
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.8e-101 376.7 302 67.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 5.3e-98 365.2 564 43.4
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 6.4e-96 358.2 829 32.3
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 4.8e-91 342.0 217 80.2
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 5.3e-90 338.6 244 68.4
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.5e-89 337.0 410 46.8
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 8.4e-88 331.3 247 64.4
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-86 327.4 457 41.1
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 7.9e-86 324.7 362 54.7
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 2.5e-84 319.7 829 29.7
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 9.6e-84 317.8 307 56.0
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-82 313.9 890 28.5
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.2e-81 310.8 353 49.6
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 2.0e-81 310.1 619 33.4
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-72 280.0 326 49.4
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-71 277.7 292 53.4
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.3e-69 270.0 685 30.1
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.1e-69 268.9 961 27.2
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.5e-68 267.3 773 29.6
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.7e-62 246.5 327 44.6
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.7e-56 227.3 155 72.3
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 6.5e-48 198.7 389 34.2
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 4.0e-45 189.5 213 53.1
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.5e-39 171.0 720 24.4
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.9e-32 146.7 118 65.3
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 9.8e-28 131.7 92 69.6
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.4e-26 127.9 82 73.2
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 8.6e-24 118.6 115 52.2
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 5.2e-21 109.4 85 62.4
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-20 106.7 109 55.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.7e-19 104.4 107 58.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-19 103.2 137 46.7
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.7e-19 103.2 111 47.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.9e-19 102.8 125 50.4
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.4e-18 100.5 70 71.4
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.1e-13 83.6 93 45.2
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 8.9e-13 82.0 136 35.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 7.5e-12 79.0 60 60.0
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.4e-10 73.9 49 77.6
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 3.2e-10 73.6 60 58.3
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 4.1e-10 73.2 60 58.3
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 6.0e-09 69.3 45 75.6
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 7.3e-07 62.4 59 52.5


User provided reference genes

Program Settings