Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 2.4e-42 175.3 97 100.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.4e-39 166.0 95 96.8
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 2.7e-38 161.8 97 92.8
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.0e-37 159.8 95 93.7
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.7e-37 159.1 95 91.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.3e-36 154.8 96 91.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 7.3e-36 153.7 97 85.6
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 2.0e-33 145.6 96 88.5
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 9.9e-33 143.3 98 84.7
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.3e-32 142.9 91 89.0
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.2e-32 142.1 90 92.2
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 7.1e-31 137.1 91 87.9
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 7.1e-31 137.1 91 87.9
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.6e-30 136.0 96 82.3
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.0e-29 133.3 91 85.7
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.0e-29 133.3 91 85.7
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 6.2e-27 124.0 90 75.6
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 8.1e-27 123.6 95 75.8
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 2.0e-25 119.0 80 88.8
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-25 118.2 98 66.3
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 5.8e-25 117.5 96 69.8
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 4.9e-24 114.4 96 69.8
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 1.9e-23 112.5 98 64.3
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.4e-23 112.1 98 62.2
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 2.4e-23 112.1 96 65.6
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 5.5e-23 110.9 96 64.6
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.2e-22 109.8 98 64.3
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.5e-22 108.2 93 66.7
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.9e-22 107.1 91 67.0
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.0e-21 106.7 91 68.1
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.3e-21 105.5 96 63.5
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.0e-21 105.1 99 62.6
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.0e-21 105.1 96 63.5
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 6.7e-21 104.0 96 62.5
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 8.7e-21 103.6 95 62.1
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 8.7e-21 103.6 96 62.5
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.9e-20 102.4 95 61.1
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 4.3e-20 101.3 97 59.8
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 5.6e-20 100.9 90 62.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.6e-20 100.9 96 62.5
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.4e-20 100.5 98 60.2
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 9.6e-20 100.1 91 60.4
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.6e-20 100.1 95 61.1
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.6e-20 100.1 95 61.1
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 9.6e-20 100.1 95 61.1
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.3e-19 99.8 90 63.3
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.6e-19 99.4 95 62.1
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.8e-19 98.6 98 59.2
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 3.7e-19 98.2 95 57.9
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 6.2e-19 97.4 95 63.2
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.8e-18 95.9 102 54.9
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 6.9e-18 94.0 97 55.7
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 9.0e-18 93.6 97 62.9
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.0e-17 92.4 93 57.0
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 2.6e-17 92.0 98 59.2
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 3.4e-17 91.7 100 58.0
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 3.4e-17 91.7 103 57.3
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 4.5e-17 91.3 104 51.9
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 5.8e-17 90.9 93 54.8
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 7.6e-17 90.5 93 54.8
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.7e-16 89.4 95 52.6
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 3.8e-16 88.2 98 55.1
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 3.8e-16 88.2 90 57.8
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 6.5e-16 87.4 97 52.6
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.5e-15 85.5 82 56.1
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 3.2e-15 85.1 93 53.8
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 4.2e-15 84.7 96 51.0
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 5.5e-15 84.3 95 50.5
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 7.1e-15 84.0 92 56.5
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.6e-14 82.8 95 50.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.6e-14 82.8 95 50.5
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.6e-14 82.8 95 50.5
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 2.1e-14 82.4 86 57.0
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 2.1e-14 82.4 86 57.0
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 3.5e-14 81.6 90 56.7
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 3.5e-14 81.6 96 50.0
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 6.0e-14 80.9 96 49.0
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 7.9e-14 80.5 88 54.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.3e-13 79.7 96 51.0
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.3e-13 79.7 90 54.4
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.8e-13 79.3 90 52.2
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.8e-13 79.3 91 53.8
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.3e-13 79.0 95 52.6
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.0e-13 78.6 91 53.8
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 3.0e-13 78.6 81 55.6
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 8.7e-13 77.0 97 49.5
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.1e-12 76.6 92 48.9
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 1.5e-12 76.3 93 51.6
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.9e-12 75.9 91 49.5
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 3.3e-12 75.1 93 54.8
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 2.8e-11 72.0 97 47.4
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 8.2e-11 70.5 75 54.7
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 8.2e-11 70.5 91 47.3
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 8.2e-11 70.5 92 51.1
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.4e-10 69.7 94 47.9
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.4e-10 69.7 85 54.1
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.4e-10 68.9 93 48.4
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 4.1e-10 68.2 91 48.4
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 6.9e-10 67.4 93 52.7
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 6.9e-10 67.4 92 46.7
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.2e-09 66.6 85 47.1
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.5e-09 66.2 96 50.0
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.5e-09 66.2 84 52.4
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.5e-09 66.2 85 50.6
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 2.0e-09 65.9 96 49.0
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.4e-07 59.7 44 65.9
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.2e-07 58.2 84 50.0
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.2e-07 58.2 84 50.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 4.2e-07 58.2 46 63.0
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 5.5e-07 57.8 99 43.4
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 7.2e-07 57.4 96 42.7
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 7.2e-07 57.4 84 48.8
ATR0733G142 Amborella trichopoda HOM05D006766 ORTHO05D008534 9.3e-07 57.0 92 43.5
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 9.3e-07 57.0 96 44.8
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 9.3e-07 57.0 94 47.9
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 2.1e-06 55.8 73 49.3
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.7e-06 55.5 66 47.0
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.6e-06 55.1 82 43.9
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 4.6e-06 54.7 79 35.4
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.1e-06 54.3 92 43.5
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 7.9e-06 53.9 82 42.7
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 7.9e-06 53.9 82 42.7


User provided reference genes

Program Settings