Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 7.5e-147 523.9 268 100.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.5e-139 499.6 268 96.3
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 3.8e-135 485.0 268 92.5
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.0e-132 475.3 268 91.4
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.2e-131 473.4 266 90.6
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 5.0e-127 458.0 268 88.1
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 2.3e-124 449.1 268 86.2
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 3.0e-124 448.7 282 83.7
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 4.0e-124 448.4 281 83.3
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 5.2e-124 448.0 268 86.6
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 6.8e-124 447.6 268 86.6
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.5e-123 446.4 302 78.1
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.1e-121 440.3 268 82.8
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.3e-111 406.0 268 82.8
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.4e-105 386.7 268 70.5
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 4.6e-104 381.7 266 69.5
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 7.8e-104 380.9 268 70.5
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.3e-103 379.4 268 69.0
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 6.6e-103 377.9 268 69.0
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.5e-102 376.7 272 70.6
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.3e-102 375.2 268 68.3
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.2e-101 373.6 268 70.1
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.2e-101 373.6 268 70.1
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.2e-101 373.6 268 70.5
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 2.1e-101 372.9 268 68.3
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.6e-101 372.1 268 70.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 8.1e-101 370.9 245 73.5
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 8.1e-101 370.9 267 68.5
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 8.1e-101 370.9 268 68.3
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.1e-100 370.5 268 69.8
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.1e-100 370.5 267 68.2
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.4e-100 370.2 268 68.7
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.4e-100 370.2 268 69.0
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.8e-100 369.8 268 68.7
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 4.0e-100 368.6 266 69.2
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 5.2e-100 368.2 267 66.7
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 5.2e-100 368.2 267 66.7
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 5.2e-100 368.2 268 67.5
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 6.8e-100 367.9 267 67.4
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 8.9e-100 367.5 268 68.3
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.0e-99 366.3 271 70.8
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.6e-99 365.9 268 68.7
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.4e-99 365.5 268 67.2
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 3.4e-99 365.5 271 67.5
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 7.6e-99 364.4 268 65.3
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 7.6e-99 364.4 268 68.3
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 9.9e-99 364.0 268 66.8
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 9.9e-99 364.0 268 64.9
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 9.9e-99 364.0 268 69.0
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.8e-98 362.1 268 68.7
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 3.8e-98 362.1 268 66.4
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.9e-98 361.7 268 65.3
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-97 360.1 256 69.5
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 4.2e-97 358.6 245 70.6
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 5.4e-97 358.2 268 64.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 7.1e-97 357.8 292 64.7
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 9.2e-97 357.5 268 67.9
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 9.2e-97 357.5 266 67.7
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.2e-96 357.1 245 68.6
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.2e-96 357.1 249 67.9
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.6e-96 356.7 269 68.0
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 1.6e-96 356.7 268 67.2
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 2.1e-96 356.3 243 70.8
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.1e-96 356.3 305 62.3
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.1e-96 356.3 245 68.2
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 2.7e-96 355.9 256 67.2
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 3.5e-96 355.5 275 66.2
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 4.6e-96 355.1 256 67.6
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 4.6e-96 355.1 243 67.9
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.0e-95 354.0 256 67.6
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 1.0e-95 354.0 268 64.6
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 1.7e-95 353.2 245 67.8
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.0e-95 352.4 270 66.3
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 3.0e-95 352.4 229 73.4
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 3.9e-95 352.1 244 68.0
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.1e-94 350.5 265 64.5
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.1e-94 350.5 247 70.0
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.1e-94 350.5 244 70.1
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 5.6e-94 348.2 268 63.1
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 7.3e-94 347.8 247 67.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 7.3e-94 347.8 247 67.2
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.6e-93 346.7 268 62.3
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.6e-93 346.7 234 71.8
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.6e-93 346.7 250 66.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.6e-93 346.7 287 62.7
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 2.8e-93 345.9 252 65.5
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 2.8e-93 345.9 234 72.6
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.2e-93 344.7 245 65.3
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.1e-92 344.0 245 65.7
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.8e-92 343.2 266 63.5
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 2.4e-92 342.8 268 61.9
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 3.1e-92 342.4 266 64.3
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 4.0e-92 342.0 268 61.2
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 4.0e-92 342.0 235 68.1
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 4.0e-92 342.0 255 65.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 5.3e-92 341.7 242 68.2
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 5.3e-92 341.7 243 67.1
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.5e-91 340.1 245 65.3
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.5e-91 340.1 245 66.1
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 2.6e-91 339.3 268 61.6
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 3.4e-91 339.0 271 63.5
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 4.4e-91 338.6 246 65.0
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 9.9e-91 337.4 246 67.5
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.3e-90 337.0 245 63.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.9e-90 335.9 268 60.8
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.8e-90 335.5 234 69.2
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.4e-89 333.6 245 64.9
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.9e-89 333.2 245 65.3
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.2e-88 330.5 211 75.4
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.7e-88 329.3 246 66.7
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.6e-88 328.6 338 54.7
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.6e-88 328.6 263 63.5
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 6.0e-88 328.2 335 52.8
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.3e-87 327.0 214 72.9
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.3e-87 327.0 264 60.2
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.5e-86 323.6 211 75.4
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.3e-86 322.0 211 73.5
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.1e-85 319.7 211 73.0
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 8.1e-85 317.8 268 62.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 7.6e-83 311.2 245 60.8
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.3e-82 310.5 245 62.0
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.4e-81 307.0 268 61.2
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 3.5e-80 302.4 210 68.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 6.0e-80 301.6 267 60.3
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 7.9e-80 301.2 243 63.8
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.0e-79 300.8 252 58.7
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.1e-78 297.4 242 61.6
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 1.5e-78 297.0 277 59.2
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.5e-78 296.2 205 67.3
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.4e-76 289.7 184 78.3
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 9.0e-76 287.7 237 58.2
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.6e-75 286.2 202 68.8
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 7.6e-75 284.6 268 54.1
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 6.4e-74 281.6 268 58.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 9.3e-73 277.7 243 57.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.2e-72 277.3 204 66.7
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.0e-71 272.7 305 48.9
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 6.7e-71 271.6 243 55.6
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-70 270.8 196 69.4
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 4.3e-70 268.9 202 64.4
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.1e-68 262.7 234 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 4.0e-68 262.3 245 53.1
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 4.0e-68 262.3 202 61.9
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.5e-67 260.4 243 53.1
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 6.0e-64 248.4 252 49.2
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.3e-63 247.3 246 54.5
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.0e-58 231.1 234 50.0
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.3e-58 230.7 146 78.1
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.1e-56 221.9 207 58.0
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.4e-55 220.7 139 74.1
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 6.7e-55 218.4 246 45.1
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.4e-52 209.9 187 58.8
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.7e-45 186.0 166 60.2
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 4.5e-43 179.1 122 72.1
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 7.0e-36 155.2 119 69.7
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 7.0e-36 155.2 119 69.7
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.2e-35 154.5 105 72.4
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.5e-35 152.5 104 65.4
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 9.4e-33 144.8 148 56.1
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.1e-32 142.1 100 70.0
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 3.0e-31 139.8 242 36.4
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.0e-27 127.1 99 65.7
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 5.2e-23 112.5 176 42.0
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.7e-21 107.5 82 64.6
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 4.8e-21 105.9 165 40.0
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 9.1e-20 101.7 64 68.8
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 4.7e-16 89.4 295 25.4
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.1e-16 89.0 85 55.3
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.0e-14 84.0 65 55.4
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.7e-13 79.7 68 55.9
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-12 77.4 65 56.9
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.0e-07 61.6 123 37.4
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 9.8e-06 55.1 191 24.6


User provided reference genes

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