Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.4e-122 441.0 226 100.0
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 8.3e-115 417.2 222 95.5
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 8.3e-115 417.2 222 95.5
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-114 416.4 221 95.5
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.4e-114 415.6 221 95.5
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 7.0e-114 414.1 220 95.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.0e-113 412.5 221 94.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.2e-110 403.3 221 91.0
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 4.7e-110 401.4 224 89.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 8.0e-110 400.6 224 87.9
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-109 399.8 224 88.8
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-109 399.4 224 88.8
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.5e-108 396.4 224 88.4
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 2.0e-108 396.0 224 87.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-108 395.6 224 87.5
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.8e-108 393.7 221 88.7
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 4.9e-107 391.3 222 91.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 8.3e-107 390.6 224 87.5
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-106 390.2 224 87.5
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.2e-106 388.7 221 88.2
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 3.2e-106 388.7 221 88.2
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 4.1e-106 388.3 224 87.1
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.2e-105 386.7 221 88.2
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.0e-105 386.0 221 86.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.0e-104 382.1 203 95.6
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-102 376.7 209 89.5
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 8.1e-102 374.0 202 93.6
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 2.6e-100 369.0 212 88.2
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 2.6e-100 369.0 212 88.2
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-99 365.2 207 87.9
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.1e-98 361.7 221 79.2
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 4.1e-98 361.7 221 79.6
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.2e-97 360.1 226 77.9
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 7.8e-97 357.5 222 77.0
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.3e-96 355.9 221 79.6
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.3e-96 355.9 226 78.3
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 5.1e-96 354.8 223 77.6
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.5e-95 353.2 225 79.1
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.5e-95 353.2 221 78.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.5e-95 353.2 227 75.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.5e-95 352.4 222 79.3
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.3e-95 351.7 223 76.7
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 5.6e-95 351.3 220 77.3
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 7.3e-95 350.9 227 76.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 9.5e-95 350.5 218 77.5
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 9.5e-95 350.5 223 77.1
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.6e-94 348.6 217 77.4
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 6.2e-94 347.8 221 78.7
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.8e-93 346.3 227 75.3
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.3e-93 345.9 220 75.0
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.3e-93 345.9 218 77.5
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 4.0e-93 345.1 222 74.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 5.2e-93 344.7 226 73.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 6.8e-93 344.4 226 73.9
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-92 343.6 214 76.6
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-92 343.6 226 73.5
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.5e-92 343.2 214 76.6
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 3.4e-92 342.0 221 74.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.3e-91 340.1 219 75.8
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.3e-91 340.1 218 74.8
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.7e-91 339.7 214 75.7
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.7e-91 339.7 217 75.6
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 2.9e-91 339.0 217 77.0
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 4.9e-91 338.2 221 73.3
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 6.4e-91 337.8 226 71.7
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 6.4e-91 337.8 224 75.9
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 8.3e-91 337.4 223 75.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.1e-90 337.0 220 74.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.9e-90 336.3 224 75.9
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.9e-90 336.3 219 75.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.9e-90 336.3 219 75.8
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.9e-90 336.3 219 75.8
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 3.2e-90 335.5 219 75.3
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 4.1e-90 335.1 221 73.3
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.1e-90 334.3 224 75.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 7.1e-90 334.3 221 73.8
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.1e-90 334.3 219 75.3
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.1e-89 332.8 223 72.6
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 2.1e-89 332.8 220 73.2
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 2.7e-89 332.4 221 73.3
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.5e-89 332.0 215 74.9
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 6.0e-89 331.3 220 71.4
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 7.8e-89 330.9 221 74.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.0e-88 328.9 220 72.7
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 3.0e-88 328.9 219 71.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.9e-88 328.6 219 72.6
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.9e-88 328.6 221 73.8
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.6e-88 327.8 219 72.6
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 6.6e-88 327.8 202 79.2
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 6.6e-88 327.8 219 70.8
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.1e-87 327.0 204 76.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.9e-87 326.2 227 70.5
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.3e-87 325.5 235 69.8
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.3e-87 325.5 215 74.9
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 7.3e-87 324.3 217 71.9
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.2e-86 323.6 220 71.8
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.2e-86 323.6 216 71.8
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.8e-86 322.4 216 73.6
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.6e-86 322.0 216 73.1
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 8.1e-86 320.9 226 70.8
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.1e-85 320.5 216 72.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.4e-85 319.3 215 73.0
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 3.1e-85 318.9 218 71.6
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 4.0e-85 318.5 218 72.5
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 5.2e-85 318.2 212 71.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 5.2e-85 318.2 222 69.8
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 5.2e-85 318.2 222 69.8
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 7.6e-84 314.3 204 75.5
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.3e-83 313.5 204 72.5
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.8e-83 312.0 220 69.1
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.8e-83 312.0 210 71.4
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.9e-83 311.6 210 71.4
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.4e-83 310.8 204 74.5
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-82 309.3 214 70.6
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.3e-82 307.4 204 81.9
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.3e-82 307.4 220 68.2
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.2e-81 307.0 220 69.1
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 3.5e-81 305.4 203 72.4
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 3.5e-81 305.4 229 67.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 3.0e-80 302.4 224 68.3
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.0e-80 302.4 206 71.4
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.5e-79 299.3 250 61.6
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.6e-78 296.6 221 65.6
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.8e-78 295.0 202 71.3
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-76 288.1 160 93.1
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.3e-75 287.0 214 65.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.7e-75 286.6 241 60.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.9e-75 285.8 212 67.0
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.9e-74 283.1 198 70.7
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 3.2e-74 282.3 202 67.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 6.0e-73 278.1 214 65.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 6.6e-72 274.6 186 72.0
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 4.3e-71 271.9 176 75.6
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.3e-71 271.9 192 70.8
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.8e-70 268.5 224 63.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.1e-70 267.7 208 68.3
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.5e-68 263.5 210 65.2
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 4.5e-68 261.9 221 60.6
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.7e-65 252.7 203 64.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.6e-65 251.9 220 58.6
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 7.9e-65 251.1 152 86.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 8.7e-64 247.7 219 59.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 9.6e-63 244.2 161 77.0
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.7e-62 242.3 230 57.4
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.1e-61 240.7 215 60.5
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.2e-60 237.3 197 61.9
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 3.4e-60 235.7 150 78.7
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 5.5e-58 228.4 216 56.9
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 7.1e-58 228.0 215 56.7
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.5e-57 225.7 208 60.6
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 3.5e-57 225.7 212 57.1
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.5e-55 220.3 216 54.6
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.1e-54 216.5 185 62.7
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.7e-51 206.8 108 97.2
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.7e-51 206.8 158 65.8
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.5e-50 201.8 215 49.8
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.5e-47 193.0 221 52.5
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 4.3e-47 192.2 188 62.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 9.4e-42 174.5 240 45.0
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.4e-37 159.8 112 68.8
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-36 157.5 112 78.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.9e-35 152.9 99 75.8
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.1e-34 151.0 229 42.4
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.1e-34 151.0 237 40.1
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.5e-34 149.8 217 42.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.1e-29 131.3 123 57.7
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.6e-25 119.4 157 43.3
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 8.0e-25 118.2 78 73.1
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 7.7e-20 101.7 74 62.2
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 7.2e-18 95.1 78 60.3
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.7e-14 84.0 205 31.2
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.1e-13 79.3 74 58.1
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 9.1e-13 78.2 105 45.7
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 6.8e-08 62.0 40 62.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.3e-06 57.8 66 51.5


User provided reference genes

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