Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.0e-86 320.5 171 100.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.4e-68 261.9 175 84.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.0e-48 197.2 175 70.3
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.4e-45 186.0 165 70.9
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.9e-43 179.1 165 64.8
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 4.2e-42 175.3 175 61.1
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.2e-36 157.1 178 57.3
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 4.6e-33 145.2 146 61.6
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 9.6e-31 137.5 147 59.2
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.8e-27 125.6 146 56.8
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.4e-26 123.6 146 56.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.2e-26 122.5 128 59.4
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 7.9e-25 117.9 107 65.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.8e-22 109.4 224 36.6
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 8.1e-22 107.8 230 37.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.4e-21 107.1 211 39.8
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.4e-21 106.3 237 38.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 5.3e-21 105.1 145 46.2
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.2e-20 104.0 75 70.7
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.4e-20 102.4 156 45.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.5e-20 102.1 222 35.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.0e-19 100.9 157 42.7
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.3e-19 100.5 105 52.4
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.3e-19 100.5 126 47.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.3e-19 100.5 126 47.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.7e-19 100.1 126 46.0
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.7e-19 100.1 229 34.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.2e-19 99.8 239 35.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.2e-19 99.8 239 35.6
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.9e-19 98.6 127 47.2
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.5e-19 98.2 203 35.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 8.4e-19 97.8 224 35.3
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.1e-18 97.4 240 36.7
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.4e-18 97.1 192 38.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.5e-18 96.3 230 36.1
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.2e-18 95.9 222 34.2
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-18 95.5 104 53.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.5e-18 95.1 97 57.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.5e-18 95.1 156 43.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.1e-18 94.7 140 42.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.1e-18 94.7 210 34.8
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 9.3e-18 94.4 164 43.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 9.3e-18 94.4 237 36.3
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.2e-17 94.0 182 40.1
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.6e-17 93.6 217 35.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-17 93.6 211 34.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.1e-17 93.2 223 33.6
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.7e-17 92.8 231 35.9
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.5e-17 92.4 130 44.6
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.5e-17 92.4 130 44.6
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.5e-17 92.4 130 44.6
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.5e-17 92.4 206 36.9
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.0e-17 91.7 225 33.8
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 6.0e-17 91.7 223 34.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 7.9e-17 91.3 209 33.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-16 90.9 225 33.8
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.3e-16 90.5 212 35.4
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.8e-16 90.1 216 36.6
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 2.3e-16 89.7 130 43.1
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.0e-16 89.4 215 35.3
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 5.1e-16 88.6 212 36.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.1e-16 88.6 113 48.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.1e-16 88.6 185 37.8
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 6.7e-16 88.2 71 64.8
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 6.7e-16 88.2 215 36.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-15 87.4 80 57.5
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.1e-15 87.4 127 46.5
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-15 87.4 196 34.7
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 2.5e-15 86.3 204 32.4
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.5e-15 86.3 180 36.1
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 3.3e-15 85.9 125 45.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.3e-15 85.9 196 34.7
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.3e-14 84.0 160 39.4
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.1e-14 83.2 104 51.0
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.8e-14 82.8 212 36.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.7e-14 82.4 212 34.4
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.2e-14 81.6 228 33.3
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 8.2e-14 81.3 219 34.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.2e-14 81.3 210 36.2
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 8.2e-14 81.3 212 35.8
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.4e-13 80.5 101 46.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 3.1e-13 79.3 97 46.4
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 6.9e-13 78.2 197 35.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.2e-12 77.4 105 50.5
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.0e-12 76.6 234 33.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.0e-12 76.6 86 48.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.6e-12 76.3 74 52.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.5e-12 75.5 82 48.8
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.3e-11 73.9 67 53.7
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.3e-11 73.9 103 45.6
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.7e-11 73.6 204 35.3
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.7e-11 73.6 92 42.4
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 2.2e-11 73.2 67 53.7
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.8e-11 72.4 200 32.5
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.8e-11 72.4 187 35.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 5.0e-11 72.0 103 45.6
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 6.5e-11 71.6 67 52.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 8.4e-11 71.2 67 50.7
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.4e-10 70.5 70 50.0
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.9e-10 70.1 78 55.1
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.5e-10 69.7 78 48.7
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.5e-10 69.7 67 50.7
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.5e-10 69.7 87 42.5
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.5e-10 69.7 98 44.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.5e-10 69.7 96 40.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.5e-10 69.7 158 38.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.5e-10 69.7 67 53.7
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.2e-10 69.3 85 47.1
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.2e-10 68.9 223 31.8
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.2e-10 68.9 68 54.4
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 4.2e-10 68.9 192 32.3
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 5.5e-10 68.6 108 45.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.1e-10 68.2 91 45.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 7.1e-10 68.2 68 50.0
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.1e-10 68.2 67 47.8
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 9.3e-10 67.8 97 40.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 9.3e-10 67.8 67 47.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.2e-09 67.4 67 49.3
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.6e-09 67.0 65 52.3
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.7e-09 66.2 70 47.1
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.7e-09 66.2 73 49.3
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.7e-09 66.2 67 46.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.7e-09 66.2 87 43.7
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 3.5e-09 65.9 221 27.6
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 4.6e-09 65.5 78 46.2
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 6.1e-09 65.1 115 38.3
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.1e-09 65.1 213 30.5
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.1e-09 65.1 173 34.1
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.0e-08 64.3 95 40.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.8e-08 63.5 214 27.6
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.8e-08 63.5 202 31.7
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.0e-08 62.8 125 37.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.0e-08 62.8 112 37.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.1e-08 62.0 115 38.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.7e-08 61.2 158 31.6
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.5e-07 60.5 173 32.4
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.9e-07 60.1 216 30.1
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.9e-07 60.1 142 33.8
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.5e-07 59.7 89 37.1
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.3e-07 59.3 84 44.0
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.7e-07 58.5 64 46.9
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.7e-07 58.5 195 30.8
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 7.4e-07 58.2 126 35.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 7.4e-07 58.2 76 44.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 9.7e-07 57.8 92 41.3
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.7e-07 57.8 168 33.3
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.6e-06 57.0 65 46.2
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-06 56.6 51 54.9
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.2e-06 56.6 53 50.9
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.8e-06 56.2 51 54.9
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.7e-06 55.8 83 39.8
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.8e-06 55.5 140 33.6
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 6.3e-06 55.1 67 41.8
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 6.3e-06 55.1 156 33.3


User provided reference genes

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