Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 2.9e-260 901.4 445 100.0
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 8.6e-249 863.2 443 94.8
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-248 862.1 445 94.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 6.8e-246 853.6 445 93.0
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.1e-238 829.7 446 91.3
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 8.9e-238 826.6 466 86.9
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.1e-230 803.1 459 86.3
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.6e-229 798.5 445 89.0
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 5.8e-229 797.3 442 88.7
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 3.8e-228 794.7 446 85.4
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.4e-211 738.8 451 84.0
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.8e-207 724.5 411 86.9
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 7.6e-205 717.2 445 75.1
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 8.4e-204 713.8 445 75.7
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 5.5e-203 711.1 445 75.5
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.7e-202 708.8 444 75.5
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 2.7e-202 708.8 445 74.8
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.0e-201 706.8 445 74.8
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.3e-201 706.4 445 74.8
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 6.7e-201 704.1 445 75.1
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 1.9e-200 702.6 445 75.5
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.5e-200 702.2 445 73.0
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.5e-200 702.2 444 74.5
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 7.4e-200 700.7 445 73.5
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 2.2e-199 699.1 439 76.1
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 3.7e-199 698.4 443 74.3
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 4.8e-199 698.0 445 74.2
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.1e-198 696.8 441 74.4
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.4e-198 696.4 441 74.6
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.4e-198 696.4 445 72.1
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 4.1e-198 694.9 446 72.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.1e-198 694.9 446 73.8
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 4.5e-197 691.4 474 70.5
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 4.5e-197 691.4 457 74.2
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 7.7e-197 690.6 445 74.2
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.2e-196 689.1 441 74.4
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 3.8e-196 688.3 445 73.9
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 6.5e-196 687.6 440 74.3
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 8.5e-196 687.2 445 73.3
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.9e-195 686.0 445 72.8
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 3.2e-195 685.3 442 72.6
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 3.2e-195 685.3 443 72.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 3.2e-195 685.3 445 72.8
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.6e-194 681.8 437 74.4
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.0e-193 680.2 443 72.5
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.8e-193 679.5 445 74.2
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.0e-192 676.0 445 72.8
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.7e-191 671.8 445 71.5
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.0e-188 663.7 435 72.6
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.7e-188 662.9 445 72.1
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.2e-188 662.5 441 71.9
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 2.9e-188 662.1 451 70.7
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.9e-188 662.1 440 70.2
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 8.5e-188 660.6 445 71.7
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.2e-186 656.8 445 71.9
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.6e-186 656.4 439 69.7
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.1e-186 656.0 441 71.2
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 3.6e-186 655.2 446 72.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.0e-185 652.1 447 69.1
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 5.7e-184 647.9 442 71.3
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.2e-183 646.0 448 68.8
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.4e-182 643.3 465 69.9
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 2.6e-181 639.0 445 67.6
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 3.5e-181 638.6 443 68.8
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.0e-180 637.1 447 69.6
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.0e-180 637.1 431 71.0
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 8.5e-180 634.0 438 69.6
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.2e-178 630.2 405 72.6
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 6.1e-178 627.9 431 70.3
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 6.1e-178 627.9 422 72.0
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.2e-170 603.6 416 70.4
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.4e-169 600.1 445 66.7
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.4e-166 590.1 434 72.1
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.4e-166 590.1 421 69.6
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.6e-165 586.6 435 65.3
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.7e-165 585.9 468 63.5
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.1e-163 580.5 360 73.6
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 5.5e-163 578.2 383 71.5
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.6e-162 576.6 447 64.4
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.7e-162 575.9 341 78.0
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.3e-159 564.3 387 70.0
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.3e-159 564.3 387 70.3
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 4.0e-153 545.4 656 47.3
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 9.8e-152 540.8 353 73.9
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 2.3e-145 519.6 438 57.1
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.6e-144 516.2 443 58.0
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 3.4e-144 515.8 354 69.8
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.9e-143 512.7 444 59.9
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.7e-132 476.9 389 60.7
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 3.9e-132 475.7 444 55.4
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.9e-131 473.4 436 56.2
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 4.3e-131 472.2 521 51.2
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 8.1e-130 468.0 445 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.8e-129 466.8 445 55.5
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 8.9e-129 464.5 343 67.9
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.1e-126 457.6 363 60.3
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 3.0e-124 449.5 285 75.1
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 6.6e-124 448.4 380 62.6
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 4.7e-122 442.2 285 73.3
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.0e-120 436.8 279 76.7
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 4.4e-120 435.6 282 73.4
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 2.9e-119 433.0 285 71.6
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 9.6e-115 417.9 450 52.2
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.1e-113 414.5 445 51.0
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 9.0e-113 411.4 461 45.6
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 2.7e-109 399.8 441 51.7
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 8.7e-108 394.8 286 67.1
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.4e-105 387.5 445 49.4
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.5e-104 384.0 407 51.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 5.8e-104 382.1 288 66.3
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 3.4e-96 356.3 445 46.5
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 8.4e-95 351.7 212 79.7
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.4e-94 350.9 212 80.2
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.2e-87 327.0 422 45.3
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 4.2e-86 322.8 339 48.4
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.7e-69 266.9 152 82.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.7e-66 257.7 172 72.7
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.7e-66 257.7 172 72.7
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.1e-65 251.9 163 73.6
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 6.1e-61 239.2 152 71.1
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 1.1e-57 228.4 186 60.8
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 2.7e-48 197.2 126 70.6
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.2e-45 188.3 130 66.2
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 2.3e-44 184.1 126 65.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 8.8e-44 182.2 274 36.1
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 1.2e-43 181.8 130 63.8
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.9e-42 176.4 107 83.2
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 1.8e-41 174.5 131 64.9
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.8e-41 174.5 95 85.3
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 7.0e-41 172.6 123 63.4
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.6e-37 161.4 177 52.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.5e-32 143.7 96 68.8
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 3.1e-28 130.6 105 61.9
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.4e-27 127.1 93 65.6
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 7.3e-22 109.4 107 49.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.2e-17 92.4 45 91.1
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.6e-16 91.7 66 65.2
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-15 88.2 69 60.9
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.0e-15 87.4 63 69.8
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 1.5e-14 85.1 63 68.3
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 8.1e-13 79.3 48 68.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.9e-11 72.4 31 93.5


User provided reference genes

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