Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 4.8e-213 744.2 366 100.0
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 1.1e-180 636.7 360 87.2
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 3.4e-174 615.1 364 85.4
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 2.8e-173 612.1 325 93.8
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 6.8e-167 590.9 362 83.1
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 2.6e-158 562.4 361 80.1
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 6.0e-147 524.6 365 75.3
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 4.4e-142 508.4 348 75.6
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 7.6e-142 507.7 339 76.1
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.7e-141 505.4 341 75.4
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 1.5e-126 456.8 366 68.3
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 6.9e-119 431.4 377 61.0
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 4.9e-109 398.7 322 59.3
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 2.5e-105 386.3 363 52.1
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 1.5e-102 377.1 320 58.4
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 2.2e-101 373.2 313 55.9
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 1.9e-100 370.2 352 55.7
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.5e-100 369.8 367 52.0
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 2.5e-100 369.8 372 54.3
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 5.5e-100 368.6 367 51.8
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 1.2e-99 367.5 293 59.4
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.6e-99 367.1 329 55.3
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 1.3e-98 364.0 319 56.4
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.3e-98 364.0 374 49.7
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 1.8e-98 363.6 294 58.2
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 5.1e-98 362.1 325 54.5
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 1.5e-97 360.5 318 56.0
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 2.5e-97 359.8 289 58.1
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 3.3e-97 359.4 292 58.6
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 5.7e-97 358.6 323 55.4
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 7.4e-97 358.2 344 53.8
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 1.3e-96 357.5 290 58.3
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 2.2e-96 356.7 364 52.5
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 2.8e-96 356.3 308 54.9
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 4.8e-96 355.5 290 56.9
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 1.1e-95 354.4 292 58.2
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 1.1e-95 354.4 285 57.9
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 5.3e-95 352.1 319 54.2
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 6.9e-95 351.7 385 49.4
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 1.2e-94 350.9 363 48.2
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 2.0e-94 350.1 285 56.8
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 2.6e-94 349.7 349 54.2
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 4.5e-94 349.0 285 56.8
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 4.5e-94 349.0 323 52.0
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 1.0e-93 347.8 298 58.4
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 3.8e-93 345.9 311 54.3
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 6.5e-93 345.1 362 49.4
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 8.5e-93 344.7 357 49.9
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 1.4e-92 344.0 342 50.6
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 1.4e-92 344.0 374 46.3
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 2.5e-92 343.2 287 55.7
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 2.5e-92 343.2 277 60.3
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 3.2e-92 342.8 278 58.6
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 3.2e-92 342.8 311 54.0
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 3.2e-92 342.8 289 55.0
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 9.4e-92 341.3 358 49.4
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 2.7e-91 339.7 337 51.0
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 3.6e-91 339.3 347 50.4
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 6.1e-91 338.6 319 55.2
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.1e-91 338.6 334 51.8
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 7.9e-91 338.2 291 57.0
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 1.0e-90 337.8 322 51.2
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 1.4e-90 337.4 288 56.9
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 3.9e-90 335.9 348 51.1
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 1.5e-89 334.0 323 50.8
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 2.6e-89 333.2 374 50.3
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 4.4e-89 332.4 285 54.0
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 5.7e-89 332.0 290 54.1
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 5.7e-89 332.0 373 50.4
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 9.7e-89 331.3 290 55.2
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 2.2e-88 330.1 283 55.8
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 2.2e-88 330.1 296 55.4
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 8.2e-88 328.2 345 49.3
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 1.1e-87 327.8 298 54.4
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 2.4e-87 326.6 273 58.6
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 3.1e-87 326.2 299 55.5
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 5.3e-87 325.5 353 49.9
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 6.9e-87 325.1 330 52.1
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 1.5e-86 323.9 321 50.8
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 5.5e-84 315.5 353 46.7
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 1.2e-83 314.3 322 51.6
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 8.8e-82 308.1 294 52.0
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 2.0e-81 307.0 333 48.3
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 8.2e-80 301.6 337 47.8
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 1.6e-78 297.4 286 52.1
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 3.6e-75 286.2 242 59.5
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 2.0e-73 280.4 344 46.8
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 3.1e-71 273.1 348 43.1
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 2.5e-68 263.5 237 54.0
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 1.2e-67 261.2 256 51.6
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 8.0e-67 258.5 234 55.1
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 3.0e-66 256.5 248 60.5
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 5.7e-57 225.7 315 40.3
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 1.9e-52 210.7 326 36.8
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 3.5e-46 189.9 306 35.0
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 2.3e-45 187.2 222 46.4
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 5.2e-42 176.0 152 54.6
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 3.4e-41 173.3 297 33.3
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 2.9e-40 170.2 295 31.5
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 7.0e-39 165.6 158 49.4
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.3e-34 150.6 169 47.3
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 5.1e-29 132.9 106 62.3
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 4.7e-27 126.3 102 61.8
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.7e-27 126.3 134 50.7
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 2.3e-21 107.5 273 28.9
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 7.6e-17 92.4 326 27.0
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 1.1e-15 88.6 131 40.5
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.2e-15 87.0 87 51.7
Eucgr.L00579 Eucalyptus grandis HOM05D007297 ORTHO05D009352 5.4e-07 59.7 107 37.4
MCO16G326 Micromonas commoda HOM05D007297 ORTHO05D268116 6.0e-06 56.2 121 29.8


User provided reference genes

Program Settings