Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 3.8e-96 354.8 171 100.0
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 7.8e-65 250.8 149 87.2
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 2.3e-64 249.2 165 75.8
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 3.7e-59 231.9 165 72.1
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 1.9e-58 229.6 174 70.1
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 1.1e-50 203.8 141 74.5
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 1.1e-45 187.2 191 52.9
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 4.0e-45 185.3 190 53.7
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.7e-43 179.9 189 52.9
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 1.7e-43 179.9 203 51.2
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 3.8e-43 178.7 210 49.0
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 2.4e-42 176.0 148 59.5
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 9.3e-42 174.1 196 49.5
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 9.3e-42 174.1 193 49.7
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 9.3e-42 174.1 149 57.7
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 1.2e-41 173.7 156 55.8
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 2.7e-41 172.6 190 52.1
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 3.5e-41 172.2 205 48.3
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 4.6e-41 171.8 203 47.8
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 6.0e-41 171.4 196 51.0
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 1.0e-40 170.6 199 48.7
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.0e-40 170.6 199 48.7
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 1.0e-40 170.6 196 51.0
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 1.3e-40 170.2 183 51.4
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.3e-40 170.2 206 47.1
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 1.7e-40 169.9 206 49.0
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 1.7e-40 169.9 206 47.1
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 2.3e-40 169.5 190 50.0
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 2.3e-40 169.5 147 57.1
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 3.0e-40 169.1 199 48.2
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 3.0e-40 169.1 160 54.4
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 6.6e-40 167.9 199 47.7
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 8.7e-40 167.5 199 48.2
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.1e-39 167.2 203 47.3
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 1.5e-39 166.8 184 51.1
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 1.5e-39 166.8 147 56.5
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 2.5e-39 166.0 142 57.7
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 3.3e-39 165.6 175 51.4
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 7.3e-39 164.5 196 49.0
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 9.6e-39 164.1 199 47.2
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 9.6e-39 164.1 201 50.2
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 8.1e-38 161.0 148 56.8
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 8.1e-38 161.0 173 48.0
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.1e-37 160.6 212 46.7
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 6.9e-37 157.9 212 45.8
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 9.0e-37 157.5 213 46.5
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 2.0e-36 156.4 186 46.2
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 9.9e-36 154.1 205 45.4
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 9.9e-36 154.1 161 49.7
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 3.8e-35 152.1 176 47.2
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 8.4e-35 151.0 152 53.3
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 6.0e-33 144.8 190 43.7
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 6.6e-32 141.4 144 47.9
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 1.5e-31 140.2 138 50.7
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 5.6e-31 138.3 204 40.7
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 7.3e-31 137.9 146 50.0
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 4.8e-30 135.2 156 44.9
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 2.4e-29 132.9 228 39.9
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 3.1e-29 132.5 198 39.9
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 3.4e-28 129.0 133 50.4
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 1.2e-25 120.6 134 47.0
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 5.6e-23 111.7 155 43.2
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 8.1e-22 107.8 106 50.9
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 1.8e-21 106.7 161 44.7
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 3.1e-21 105.9 194 37.1
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 2.0e-20 103.2 95 55.8
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 4.5e-20 102.1 109 49.5
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 2.9e-19 99.4 99 53.5
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 1.1e-18 97.4 121 44.6
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 1.9e-18 96.7 148 41.2
MBI01_g17256_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.6e-17 93.6 83 60.2
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 2.1e-17 93.2 107 43.0
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 7.9e-17 91.3 86 55.8
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 4.8e-14 82.0 86 52.3
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.4e-13 80.5 85 51.8
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 3.1e-13 79.3 87 50.6
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 7.6e-12 74.7 88 50.0
Gohir.A13G064166 Gossypium hirsutum HOM05D008002 ORTHO05D010148 2.7e-09 66.2 80 52.5
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 1.1e-07 60.8 45 62.2


User provided reference genes

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