Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 5.5e-98 361.7 303 100.0
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 1.4e-88 330.5 303 84.2
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 7.0e-77 291.6 303 80.9
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 7.1e-69 265.0 303 77.2
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.9e-61 240.4 309 76.1
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 9.2e-61 238.0 322 68.0
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 2.7e-60 236.5 303 74.3
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 5.1e-59 232.3 307 73.9
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 5.1e-59 232.3 307 73.3
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 4.3e-58 229.2 303 72.9
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 2.1e-57 226.9 311 69.1
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 3.6e-57 226.1 307 72.6
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 2.4e-56 223.4 303 71.9
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 4.8e-41 172.6 305 62.3
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.9e-37 160.6 285 64.6
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 4.2e-37 159.5 285 64.2
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 1.1e-34 151.4 165 55.8
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.9e-34 150.6 167 50.9
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.3e-33 147.9 146 59.6
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 6.2e-33 145.6 163 52.8
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 5.3e-32 142.5 171 53.2
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 9.0e-32 141.7 170 52.4
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 1.2e-31 141.4 153 54.9
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 2.6e-31 140.2 172 49.4
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 3.4e-31 139.8 168 52.4
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 3.4e-31 139.8 143 55.9
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 7.6e-31 138.7 298 60.1
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.0e-30 138.3 137 59.1
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.3e-30 137.9 329 57.8
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 1.3e-30 137.9 169 49.7
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 8.4e-30 135.2 172 48.3
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.1e-29 134.8 152 50.7
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 2.5e-29 133.7 193 45.6
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 2.5e-29 133.7 164 54.9
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 2.5e-29 133.7 151 53.6
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 5.5e-29 132.5 286 63.3
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 9.3e-29 131.7 193 45.6
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 2.1e-28 130.6 139 56.8
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 2.1e-28 130.6 173 50.3
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.1e-28 130.6 156 50.6
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.1e-28 130.6 190 45.8
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 4.6e-28 129.4 286 62.9
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 4.6e-28 129.4 218 42.7
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 7.9e-28 128.6 183 49.2
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.8e-27 127.5 179 44.7
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.3e-27 127.1 170 49.4
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 3.0e-27 126.7 172 45.9
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 3.9e-27 126.3 154 50.6
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 5.1e-27 125.9 146 56.2
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 6.7e-27 125.6 235 39.1
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.5e-26 124.4 190 46.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 2.5e-26 123.6 187 44.9
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 4.3e-26 122.9 125 57.6
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 9.7e-26 121.7 169 47.3
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.3e-25 121.3 154 49.4
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 1.6e-25 120.9 200 43.0
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.8e-25 120.2 154 48.7
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 3.7e-25 119.8 127 53.5
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 3.7e-25 119.8 152 50.0
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 6.3e-25 119.0 151 50.3
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 8.2e-25 118.6 144 49.3
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 8.2e-25 118.6 148 52.0
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.4e-24 117.9 213 40.4
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.8e-24 117.5 185 42.7
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.4e-24 117.1 127 52.8
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 3.1e-24 116.7 179 45.8
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 4.1e-24 116.3 135 51.9
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 5.3e-24 115.9 185 42.2
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 6.9e-24 115.5 203 41.4
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 6.9e-24 115.5 142 52.8
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 9.0e-24 115.2 90 67.8
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.5e-23 114.4 147 51.7
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.5e-23 114.4 76 77.6
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.0e-23 114.0 129 55.8
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 3.4e-23 113.2 115 56.5
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 3.4e-23 113.2 170 45.9
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.4e-23 113.2 79 77.2
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 3.4e-23 113.2 109 59.6
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 4.5e-23 112.8 109 58.7
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 4.5e-23 112.8 133 51.9
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 4.5e-23 112.8 177 44.6
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 5.9e-23 112.5 65 87.7
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 7.6e-23 112.1 130 46.9
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.3e-22 111.3 59 89.8
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 1.7e-22 110.9 140 51.4
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 2.2e-22 110.5 58 93.1
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 2.2e-22 110.5 132 53.0
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.9e-22 110.2 141 47.5
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 3.8e-22 109.8 153 47.1
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 3.8e-22 109.8 158 48.7
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 3.8e-22 109.8 175 44.0
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 5.0e-22 109.4 119 53.8
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 8.5e-22 108.6 236 68.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 8.5e-22 108.6 105 59.0
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 8.5e-22 108.6 64 85.9
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 1.1e-21 108.2 75 73.3
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 4.2e-21 106.3 57 91.2
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 7.2e-21 105.5 200 38.0
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.2e-20 104.8 58 86.2
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.2e-20 104.8 58 86.2
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 2.7e-20 103.6 199 38.7
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.6e-20 103.2 67 73.1
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 3.6e-20 103.2 195 42.1
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.0e-19 101.7 87 60.9
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.0e-19 100.1 97 58.8
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 8.8e-19 98.6 106 54.7
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 7.4e-18 95.5 102 55.9
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 1.3e-17 94.7 154 42.9
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.7e-17 94.4 91 56.0
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 2.8e-17 93.6 133 46.6
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 6.3e-17 92.4 162 42.0
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.4e-13 81.3 46 87.0
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 7.2e-13 79.0 79 58.2
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.0e-11 75.1 37 97.3
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 3.9e-11 73.2 82 46.3
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 3.9e-11 73.2 80 47.5
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 5.1e-11 72.8 63 61.9
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 8.8e-11 72.0 87 44.8
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.7e-09 67.8 59 54.2
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-09 67.8 59 54.2
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 2.8e-09 67.0 59 55.9
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-08 64.3 59 50.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.4e-08 63.9 59 47.5
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 2.4e-08 63.9 81 44.4
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 2.4e-08 63.9 81 44.4
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 4.1e-08 63.2 60 51.7
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.2e-07 61.6 117 35.0
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.2e-07 61.6 115 35.7
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.2e-07 61.6 124 37.1
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.5e-07 61.2 36 83.3
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 2.6e-07 60.5 66 45.5
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 2.6e-07 60.5 45 66.7
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 2.6e-07 60.5 102 36.3
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 3.4e-07 60.1 49 53.1
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 3.4e-07 60.1 81 42.0
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-07 60.1 81 42.0
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 5.9e-07 59.3 60 46.7
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 5.9e-07 59.3 89 37.1
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.0e-06 58.5 165 32.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.3e-06 58.2 139 31.7
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 1.7e-06 57.8 60 46.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.7e-06 57.8 132 33.3
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 2.9e-06 57.0 137 32.1
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 3.8e-06 56.6 87 39.1
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 3.8e-06 56.6 155 31.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 8.5e-06 55.5 60 45.0


User provided reference genes

Program Settings