Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38065 Arabidopsis thaliana HOM05D011973 ORTHO05D014038 3.2e-99 365.2 192 100.0
AL7G12560 Arabidopsis lyrata HOM05D011973 ORTHO05D014038 7.4e-56 221.1 130 86.2
AL6G46690 Arabidopsis lyrata HOM05D011973 ORTHO05D014038 1.5e-35 153.7 143 57.3
AL6G46680 Arabidopsis lyrata HOM05D011973 ORTHO05D014038 3.2e-35 152.5 143 57.3
CARHR114330 Cardamine hirsuta HOM05D011973 ORTHO05D014038 1.2e-32 144.1 141 54.6
AT4G11940 Arabidopsis thaliana HOM05D011973 ORTHO05D014038 1.3e-31 140.6 143 55.9
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.3e-31 140.6 136 53.7
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 2.2e-31 139.8 121 57.9
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 6.3e-31 138.3 121 57.0
BcaB03g12310 Brassica carinata HOM05D011973 ORTHO05D014038 1.4e-30 137.1 136 52.9
BcaC01g00349 Brassica carinata HOM05D011973 ORTHO05D014038 2.4e-30 136.3 121 57.0
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 5.3e-30 135.2 121 56.2
Sp7g35720 Schrenkiella parvula HOM05D011973 ORTHO05D014038 2.7e-29 132.9 121 55.4
BcaB03g12308 Brassica carinata HOM05D011973 ORTHO05D014038 2.2e-28 129.8 190 44.7
AT4G11930 Arabidopsis thaliana HOM05D011973 ORTHO05D014038 1.6e-26 123.6 131 51.1
AL6G46670 Arabidopsis lyrata HOM05D011973 ORTHO05D014038 1.8e-25 120.2 123 52.8
Carub.0048s0002 Capsella rubella HOM05D011973 ORTHO05D014038 4.4e-24 115.5 142 47.2
Carub.0006s3104 Capsella rubella HOM05D011973 ORTHO05D014038 1.8e-17 93.6 128 41.4
THA.LOC104804176 Tarenaya hassleriana HOM05D000160 ORTHO05D001344 1.2e-16 90.9 165 36.4
TWI53G1224 Tripterygium wilfordii HOM05D000160 ORTHO05D001344 1.2e-10 70.9 128 37.5
TWI74G1488 Tripterygium wilfordii HOM05D000160 ORTHO05D001344 8.0e-10 68.2 124 33.9
CiPaw.02G020700 Carya illinoinensis HOM05D000160 ORTHO05D001344 6.8e-09 65.1 120 35.0
Cfa004343 Carpinus fangiana HOM05D000160 ORTHO05D001344 1.5e-08 63.9 89 40.4
Phvul.003G289300 Phaseolus vulgaris HOM05D000160 ORTHO05D001344 2.0e-08 63.5 156 31.4
Oeu027057.1 Olea europaea HOM05D000331 ORTHO05D002018 4.4e-08 62.4 123 31.7
Oeu027059.2 Olea europaea HOM05D000331 ORTHO05D002018 4.4e-08 62.4 123 31.7
DCAR_029659 Daucus carota HOM05D000160 ORTHO05D001344 5.8e-08 62.0 128 32.8
Eucgr.G00982 Eucalyptus grandis HOM05D000160 ORTHO05D001344 5.8e-08 62.0 138 31.9
Sc14g0003450 Simmondsia chinensis HOM05D000160 ORTHO05D001344 7.5e-08 61.6 124 32.3
Sc18g0007050 Simmondsia chinensis HOM05D000160 ORTHO05D001344 1.3e-07 60.8 124 32.3
Manes.02G145200 Manihot esculenta HOM05D000160 ORTHO05D001344 1.7e-07 60.5 123 31.7
MD15G1313800 Malus domestica HOM05D000160 ORTHO05D001344 2.2e-07 60.1 119 34.5
PGR102G2731 Punica granatum HOM05D000160 ORTHO05D001344 2.2e-07 60.1 87 37.9
vmacro19956 Vaccinium macrocarpon HOM05D000160 ORTHO05D001344 6.4e-07 58.5 126 32.5
BcaB07g31371 Brassica carinata HOM05D000160 ORTHO05D014752 8.3e-07 58.2 95 36.8
VMungo0251G2126 Vigna mungo HOM05D000160 ORTHO05D001344 8.3e-07 58.2 155 29.7
Cfa005701 Carpinus fangiana HOM05D000160 ORTHO05D001344 1.1e-06 57.8 91 31.9
Medtr4g093930 Medicago truncatula HOM05D000160 ORTHO05D001344 1.1e-06 57.8 121 31.4
Carub.0006s0811 Capsella rubella HOM05D000160 ORTHO05D001344 1.4e-06 57.4 137 31.4
QL11p024169 Quercus lobata HOM05D000160 ORTHO05D001344 1.4e-06 57.4 88 35.2
BcaC04g22460 Brassica carinata HOM05D000160 ORTHO05D014752 2.4e-06 56.6 92 37.0
A09p15850 Brassica napus HOM05D000160 ORTHO05D014752 2.4e-06 56.6 92 37.0
C09p19060 Brassica napus HOM05D000160 ORTHO05D014752 2.4e-06 56.6 92 37.0
BolC9t54812H Brassica oleracea HOM05D000160 ORTHO05D014752 2.4e-06 56.6 92 37.0
BraA09t37220Z Brassica rapa HOM05D000160 ORTHO05D014752 2.4e-06 56.6 92 37.0
THA.LOC104807178 Tarenaya hassleriana HOM05D000160 ORTHO05D014752 2.4e-06 56.6 105 32.4
TPR.G2892 Trifolium pratense HOM05D000160 ORTHO05D001344 2.4e-06 56.6 121 31.4
Carub.0002s0205 Capsella rubella HOM05D000160 ORTHO05D014752 4.1e-06 55.8 119 32.8
FAN24G0328 Fragaria x ananassa HOM05D000160 ORTHO05D001344 4.1e-06 55.8 139 29.5
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 5.4e-06 55.5 91 31.9
VMungo0251G3482 Vigna mungo HOM05D000160 ORTHO05D001344 5.4e-06 55.5 137 27.0
Aa31LG1G17540 Aethionema arabicum HOM05D000160 ORTHO05D001344 7.0e-06 55.1 86 37.2
FAN15G2995 Fragaria x ananassa HOM05D000160 ORTHO05D001344 7.0e-06 55.1 130 30.0
Glyma.08G068300 Glycine max HOM05D000160 ORTHO05D001344 7.0e-06 55.1 121 28.9
Phvul.002G212300 Phaseolus vulgaris HOM05D000160 ORTHO05D001344 7.0e-06 55.1 121 29.8
THA.LOC104799801 Tarenaya hassleriana HOM05D000160 ORTHO05D001344 7.0e-06 55.1 97 30.9
AT5G09540 Arabidopsis thaliana HOM05D000160 ORTHO05D001344 9.2e-06 54.7 138 29.0
Thhalv10023288m.g Eutrema salsugineum HOM05D000160 ORTHO05D014752 9.2e-06 54.7 114 33.3
Glyma.07G181500 Glycine max HOM05D000160 ORTHO05D001344 9.2e-06 54.7 121 28.9
Gohir.A02G078800 Gossypium hirsutum HOM05D000160 ORTHO05D001344 9.2e-06 54.7 131 28.2
Gorai.005G096800 Gossypium raimondii HOM05D000160 ORTHO05D001344 9.2e-06 54.7 131 28.2
Psat7g100920 Pisum sativum HOM05D000160 ORTHO05D001344 9.2e-06 54.7 121 30.6
SGA_v2.0_scaffold31G12925 Striga asiatica HOM05D000160 ORTHO05D001344 9.2e-06 54.7 135 27.4


User provided reference genes

Program Settings