Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G37720 Arabidopsis thaliana HOM05D012092 ORTHO05D001581 4.8e-42 174.1 88 100.0
CARHR246110 Cardamine hirsuta HOM05D012092 ORTHO05D001581 1.1e-33 146.4 88 84.1
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 6.9e-33 143.7 86 83.7
AL7G12960 Arabidopsis lyrata HOM05D012092 ORTHO05D001581 5.8e-32 140.6 71 94.4
Carub.0007s0253 Capsella rubella HOM05D012092 ORTHO05D001581 2.2e-31 138.7 87 82.8
A08p22740 Brassica napus HOM05D012092 ORTHO05D001581 7.4e-27 123.6 86 73.3
BraA08t34243Z Brassica rapa HOM05D012092 ORTHO05D001581 7.4e-27 123.6 86 73.3
Thhalv10026843m.g Eutrema salsugineum HOM05D012092 ORTHO05D001581 7.4e-27 123.6 86 76.7
BcaB03g12333 Brassica carinata HOM05D012092 ORTHO05D001581 6.2e-26 120.6 86 73.3
BcaNung02085 Brassica carinata HOM05D012092 ORTHO05D001581 1.1e-25 119.8 84 72.6
C07p62600 Brassica napus HOM05D012092 ORTHO05D001581 1.1e-25 119.8 84 72.6
BolC7t46675H Brassica oleracea HOM05D012092 ORTHO05D001581 1.1e-25 119.8 84 72.6
A03p65500 Brassica napus HOM05D012092 ORTHO05D001581 2.0e-24 115.5 84 70.2
BraA03t15602Z Brassica rapa HOM05D012092 ORTHO05D001581 2.0e-24 115.5 84 70.2
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 5.3e-17 90.9 84 59.5
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.7e-15 85.9 84 59.5
THA.LOC104804198 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 2.2e-15 85.5 88 56.8
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 6.5e-15 84.0 83 56.6
BcaC06g33373 Brassica carinata HOM05D012092 ORTHO05D001581 6.5e-15 84.0 72 61.1
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 8.5e-15 83.6 83 56.6
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 8.5e-15 83.6 83 56.6
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 8.5e-15 83.6 83 56.6
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 1.1e-14 83.2 89 57.3
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 4.2e-14 81.3 83 55.4
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 4.2e-14 81.3 83 55.4
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 5.5e-14 80.9 88 55.7
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 7.2e-14 80.5 85 51.8
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 1.6e-13 79.3 90 55.6
CARHR114180 Cardamine hirsuta HOM05D001756 ORTHO05D001581 7.9e-13 77.0 87 50.6
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 1.0e-12 76.6 85 48.2
CARHR114170 Cardamine hirsuta HOM05D001756 ORTHO05D001581 6.7e-12 73.9 87 48.3
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 1.1e-11 73.2 83 50.6
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 1.7e-10 69.3 84 42.9
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 1.4e-09 66.2 87 43.7
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.8e-09 65.9 84 48.8
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.1e-09 65.1 84 47.6
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 5.3e-09 64.3 84 47.6
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 6.9e-09 63.9 79 44.3
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 9.1e-09 63.5 84 47.6
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.5e-08 62.8 83 47.0
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.0e-08 62.4 89 43.8
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 2.0e-08 62.4 78 48.7
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 2.0e-08 62.4 85 48.2
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.6e-08 62.0 83 45.8
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.6e-08 62.0 82 52.4
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.6e-08 62.0 87 41.4
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.6e-08 62.0 83 47.0
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 2.6e-08 62.0 86 50.0
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 3.4e-08 61.6 86 45.3
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 4.5e-08 61.2 86 44.2
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 5.9e-08 60.8 77 46.8
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 5.9e-08 60.8 84 44.0
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 1.0e-07 60.1 83 47.0
Glyma.11G046000 Glycine max HOM05D001756 ORTHO05D001581 1.0e-07 60.1 89 41.6
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 1.0e-07 60.1 84 41.7
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 1.0e-07 60.1 85 44.7
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.3e-07 59.7 83 44.6
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 1.3e-07 59.7 90 45.6
Sabra09G0065700 Salix brachista HOM05D001756 ORTHO05D001581 1.3e-07 59.7 82 46.3
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 1.7e-07 59.3 86 40.7
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.7e-07 59.3 84 48.8
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.7e-07 59.3 84 45.2
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 2.2e-07 58.9 86 40.7
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 2.2e-07 58.9 85 43.5
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 2.2e-07 58.9 85 43.5
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 2.2e-07 58.9 83 42.2
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 2.2e-07 58.9 83 43.4
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 42.9
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 43.0
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 2.9e-07 58.5 83 44.6
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 48.8
Glyma.01G195700 Glycine max HOM05D001756 ORTHO05D001581 2.9e-07 58.5 88 42.0
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.8e-07 58.2 84 42.9
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.0e-07 57.8 83 44.6
Ciclev10026870m.g Citrus clementina HOM05D001756 ORTHO05D001581 5.0e-07 57.8 82 48.8
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 5.0e-07 57.8 77 45.5
MD08G1079100 Malus domestica HOM05D001756 ORTHO05D001581 5.0e-07 57.8 83 43.4
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 5.0e-07 57.8 87 41.4
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.0e-07 57.8 85 42.4
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.0e-07 57.8 85 42.4
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 6.5e-07 57.4 85 44.7
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 6.5e-07 57.4 84 47.6
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 6.5e-07 57.4 77 44.2
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 6.5e-07 57.4 86 40.7
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 6.5e-07 57.4 88 39.8
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 6.5e-07 57.4 83 45.8
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 6.5e-07 57.4 85 45.9
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 6.5e-07 57.4 85 44.7
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 8.5e-07 57.0 86 40.7
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 8.5e-07 57.0 81 48.1
AUR62004029 Chenopodium quinoa HOM05D001756 ORTHO05D001581 8.5e-07 57.0 85 42.4
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 8.5e-07 57.0 83 44.6
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 8.5e-07 57.0 86 43.0
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 8.5e-07 57.0 91 45.1
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 1.1e-06 56.6 80 47.5
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.1e-06 56.6 85 41.2
CiPaw.06G164100 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.1e-06 56.6 84 40.5
Peaxi162Scf00340g00412 Petunia axillaris HOM05D001756 ORTHO05D001581 1.1e-06 56.6 93 38.7
AUR62007537 Chenopodium quinoa HOM05D001756 ORTHO05D001581 1.4e-06 56.2 85 42.4
arahy.Tifrunner.gnm1.ann1.F1MTJK Arachis hypogaea HOM05D001756 ORTHO05D001581 1.9e-06 55.8 84 40.5
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 1.9e-06 55.8 86 40.7
Potri.009G085600 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.9e-06 55.8 80 45.0
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 2.5e-06 55.5 75 41.3
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 2.5e-06 55.5 78 44.9
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 3.2e-06 55.1 83 41.0
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.2e-06 55.1 82 42.7
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 4.2e-06 54.7 86 45.3
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.2e-06 54.7 80 42.5
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 4.2e-06 54.7 84 42.9
Lalb_Chr06g0164991 Lupinus albus HOM05D001756 ORTHO05D001581 5.5e-06 54.3 65 43.1
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 5.5e-06 54.3 84 44.0
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 5.5e-06 54.3 80 42.5
arahy.Tifrunner.gnm1.ann1.22FXNP Arachis hypogaea HOM05D001756 ORTHO05D001581 7.2e-06 53.9 84 39.3
Peaxi162Scf00340g00059 Petunia axillaris HOM05D001756 ORTHO05D001581 7.2e-06 53.9 86 40.7
QL06p038990 Quercus lobata HOM05D001756 ORTHO05D001581 7.2e-06 53.9 82 41.5
QL11p029356 Quercus lobata HOM05D001756 ORTHO05D001581 7.2e-06 53.9 84 42.9
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 9.4e-06 53.5 86 43.0
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 9.4e-06 53.5 86 43.0
Psat2g172320 Pisum sativum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 85 38.8
PGSC0003DMG400004941 Solanum tuberosum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 88 38.6


User provided reference genes

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