Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G37682 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 1.7e-32 142.1 76 100.0
Carub.0007s0232 Capsella rubella HOM05D002590 ORTHO05D002763 2.1e-09 65.5 53 66.0
AL7G12750 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 2.7e-09 65.1 53 64.2
BraA08t34254Z Brassica rapa HOM05D002590 ORTHO05D002763 6.0e-09 63.9 59 61.0
Thhalv10024448m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 6.0e-09 63.9 53 64.2
BcaB03g12326 Brassica carinata HOM05D002590 ORTHO05D002763 7.8e-09 63.5 60 60.0
A08p22920 Brassica napus HOM05D002590 ORTHO05D002763 7.8e-09 63.5 59 59.3
BcaNung03410 Brassica carinata HOM05D002590 ORTHO05D002763 1.0e-08 63.2 60 58.3
A03p65710 Brassica napus HOM05D002590 ORTHO05D002763 1.0e-08 63.2 60 58.3
C07p62730 Brassica napus HOM05D002590 ORTHO05D002763 1.0e-08 63.2 60 58.3
BolC7t46687H Brassica oleracea HOM05D002590 ORTHO05D002763 1.0e-08 63.2 60 58.3
BraA03t15621Z Brassica rapa HOM05D002590 ORTHO05D002763 1.0e-08 63.2 60 58.3
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.3e-08 62.8 68 52.9
Sp7g35540 Schrenkiella parvula HOM05D002590 ORTHO05D002763 1.3e-08 62.8 59 59.3
C03p78950 Brassica napus HOM05D002590 ORTHO05D002763 1.7e-08 62.4 59 59.3
AT4G37900 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 2.3e-08 62.0 51 64.7
Carub.0004s0181 Capsella rubella HOM05D002590 ORTHO05D002763 3.0e-08 61.6 40 72.5
CARHR246300 Cardamine hirsuta HOM05D002590 ORTHO05D002763 3.9e-08 61.2 53 62.3
CARHR246310 Cardamine hirsuta HOM05D002590 ORTHO05D002763 3.9e-08 61.2 66 51.5
Sp4g01683 Schrenkiella parvula HOM05D002590 ORTHO05D002763 3.9e-08 61.2 40 75.0
Aa31LG7G14160 Aethionema arabicum HOM05D002590 ORTHO05D002763 6.6e-08 60.5 40 72.5
CARHR113920 Cardamine hirsuta HOM05D002590 ORTHO05D002763 6.6e-08 60.5 40 75.0
AL4G12200 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 8.7e-08 60.1 40 72.5
BcaC01g00368 Brassica carinata HOM05D002590 ORTHO05D002763 1.5e-07 59.3 59 57.6
BolC3t20138H Brassica oleracea HOM05D002590 ORTHO05D002763 1.5e-07 59.3 59 57.6
Sed0010498 Sechium edule HOM05D002590 ORTHO05D002763 1.5e-07 59.3 53 58.5
THA.LOC104804185 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 1.5e-07 59.3 40 70.0
AT2G22660 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 1.9e-07 58.9 53 58.5
Aa31LG7G14140 Aethionema arabicum HOM05D002590 ORTHO05D002763 4.3e-07 57.8 40 70.0
A04p17130 Brassica napus HOM05D002590 ORTHO05D002763 4.3e-07 57.8 40 72.5
BraA04t17342Z Brassica rapa HOM05D002590 ORTHO05D002763 4.3e-07 57.8 40 72.5
CsaV3_3G003000 Cucumis sativus L. HOM05D002590 ORTHO05D002763 4.3e-07 57.8 40 67.5
BcaB06g27814 Brassica carinata HOM05D002590 ORTHO05D002763 5.6e-07 57.4 40 72.5
Thhalv10000046m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 5.6e-07 57.4 38 71.1
ClCG00G003360 Citrullus lanatus HOM05D002590 ORTHO05D002763 7.3e-07 57.0 53 54.7
ClCG10G002950 Citrullus lanatus HOM05D002590 ORTHO05D002763 7.3e-07 57.0 53 54.7
Gohir.A02G146100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 7.3e-07 57.0 40 65.0
Aa31LG6G14820 Aethionema arabicum HOM05D002590 ORTHO05D002763 9.6e-07 56.6 69 46.4
Duzib187G0808 Durio zibethinus HOM05D002590 ORTHO05D002763 9.6e-07 56.6 53 52.8
C04p51940 Brassica napus HOM05D002590 ORTHO05D002763 1.2e-06 56.2 40 70.0
Ciclev10024875m.g Citrus clementina HOM05D002590 ORTHO05D002763 1.2e-06 56.2 40 67.5
THA.LOC104807659 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 1.6e-06 55.8 40 70.0
AUR62019077 Chenopodium quinoa HOM05D002590 ORTHO05D002763 2.1e-06 55.5 53 54.7
ClCG10G002960 Citrullus lanatus HOM05D002590 ORTHO05D002763 2.8e-06 55.1 53 54.7
Eucgr.I00602 Eucalyptus grandis HOM05D002590 ORTHO05D002763 2.8e-06 55.1 40 67.5
Gohir.D03G034500 Gossypium hirsutum HOM05D002590 ORTHO05D002763 2.8e-06 55.1 40 62.5
Gorai.003G036200 Gossypium raimondii HOM05D002590 ORTHO05D002763 2.8e-06 55.1 40 62.5
Cpa.g.sc755.1 Carica papaya HOM05D002590 ORTHO05D002763 3.6e-06 54.7 40 65.0
Dinv36977 Davidia involucrata HOM05D002590 ORTHO05D002763 3.6e-06 54.7 53 52.8
Prupe.6G209600 Prunus persica HOM05D002590 ORTHO05D002763 4.7e-06 54.3 40 67.5
MELO3C013963.2 Cucumis melo HOM05D002590 ORTHO05D002763 6.2e-06 53.9 53 52.8
Gorai.010G085100 Gossypium raimondii HOM05D002590 ORTHO05D002763 6.2e-06 53.9 49 55.1
Manes.12G121200 Manihot esculenta HOM05D002590 ORTHO05D002763 6.2e-06 53.9 53 52.8
Potri.015G042800 Populus trichocarpa HOM05D002590 ORTHO05D002763 6.2e-06 53.9 53 54.7
Sc03g0000580 Simmondsia chinensis HOM05D002590 ORTHO05D002763 6.2e-06 53.9 56 50.0
Thecc.01G083700 Theobroma cacao HOM05D002590 ORTHO05D002763 6.2e-06 53.9 40 62.5
Gohir.A06G074100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 8.1e-06 53.5 40 65.0
Lalb_Chr16g0381481 Lupinus albus HOM05D002590 ORTHO05D002763 8.1e-06 53.5 40 60.0


User provided reference genes

Program Settings