Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 1.6e-246 855.9 508 100.0
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 2.4e-223 778.9 511 87.9
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.6e-222 776.2 480 91.9
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 6.0e-222 774.2 479 93.5
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 2.0e-209 732.6 482 88.2
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 3.5e-206 721.8 497 85.9
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 3.3e-204 715.3 482 85.1
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 3.3e-204 715.3 482 85.1
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 5.6e-204 714.5 515 82.1
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 5.6e-204 714.5 482 83.8
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 1.0e-200 703.7 493 81.7
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 1.3e-195 686.8 455 85.9
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 2.2e-184 649.4 484 79.1
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 6.3e-171 604.7 485 70.5
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 4.1e-170 602.1 502 71.7
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 4.5e-169 598.6 486 73.3
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 4.5e-169 598.6 519 67.8
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 1.3e-168 597.0 499 72.3
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 8.5e-168 594.3 484 72.3
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 9.4e-167 590.9 509 67.4
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 2.7e-166 589.3 485 70.9
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 3.6e-166 589.0 502 68.3
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.0e-165 587.4 485 69.3
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.0e-165 585.9 487 71.0
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 4.0e-165 585.5 535 65.8
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 5.2e-165 585.1 487 71.5
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 1.5e-164 583.6 515 67.4
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 1.5e-164 583.6 486 70.6
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.4e-164 582.0 499 70.7
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 5.7e-164 581.6 500 70.0
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 9.7e-164 580.9 504 68.5
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.3e-163 580.5 513 70.6
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 1.3e-163 580.5 487 70.2
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 3.7e-163 578.9 487 71.0
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.8e-163 578.6 499 69.5
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 1.8e-162 576.6 484 72.7
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 3.5e-161 572.4 483 70.4
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 5.9e-161 571.6 486 70.8
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 1.3e-160 570.5 500 69.8
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 2.2e-160 569.7 504 69.0
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.2e-160 569.7 484 69.0
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.9e-160 569.3 502 68.9
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 3.8e-160 568.9 449 72.6
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 3.8e-160 568.9 502 71.3
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.5e-159 567.0 450 73.1
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 4.2e-159 565.5 488 68.9
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 5.5e-159 565.1 485 67.8
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 9.4e-159 564.3 482 71.2
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 1.6e-158 563.5 502 71.5
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.1e-158 563.1 495 70.9
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 2.3e-157 559.7 450 70.0
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 6.8e-157 558.1 506 68.8
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 6.8e-157 558.1 450 69.6
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 3.4e-156 555.8 485 69.9
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 7.5e-156 554.7 452 69.7
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 2.2e-155 553.1 513 69.0
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 3.7e-155 552.4 455 71.0
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 6.3e-155 551.6 508 66.5
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 8.3e-155 551.2 504 69.8
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 3.5e-153 545.8 479 67.2
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 5.9e-153 545.0 500 65.8
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 3.8e-152 542.3 501 71.1
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 3.8e-152 542.3 498 72.1
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 1.1e-151 540.8 485 66.8
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 1.1e-151 540.8 453 70.6
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 3.3e-151 539.3 453 70.6
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 7.2e-151 538.1 504 64.3
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.0e-149 534.3 487 66.9
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 1.5e-148 530.4 515 65.6
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 1.5e-148 530.4 479 69.7
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.4e-148 529.3 487 66.7
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 4.9e-147 525.4 487 69.2
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 2.4e-146 523.1 499 63.9
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 6.8e-141 505.0 450 68.4
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 8.9e-141 504.6 453 69.1
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.2e-140 504.2 508 60.0
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 2.0e-140 503.4 448 68.3
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.3e-136 490.7 511 59.9
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.9e-136 489.2 377 72.9
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 6.6e-136 488.4 376 72.6
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 5.6e-135 485.3 504 62.9
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 5.6e-135 485.3 459 63.0
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 3.1e-133 479.6 487 62.2
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 8.9e-133 478.0 378 71.4
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.7e-131 472.6 389 71.7
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 5.1e-128 462.2 378 69.8
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 1.5e-127 460.7 498 56.0
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.1e-122 444.5 392 69.6
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 4.9e-115 419.1 537 55.9
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 8.1e-110 401.7 475 54.7
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 6.9e-109 398.7 383 67.6
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.7e-105 386.7 501 49.9
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.2e-100 371.3 381 64.3
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 2.0e-100 370.5 469 52.7
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 3.2e-98 363.2 344 68.6
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 6.2e-94 349.0 451 55.7
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 5.3e-93 345.9 363 65.0
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 2.2e-91 340.5 322 67.1
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 4.6e-89 332.8 362 61.6
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 7.9e-89 332.0 310 67.7
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 3.0e-88 330.1 477 50.7
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 7.6e-84 315.5 308 65.9
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 2.2e-83 313.9 289 65.4
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 3.8e-83 313.2 392 61.7
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.2e-78 297.4 468 47.4
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 4.5e-76 289.7 339 60.5
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 2.7e-65 253.8 242 63.6
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 3.9e-64 250.0 335 57.6
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 5.3e-61 239.6 272 58.5
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 3.8e-59 233.4 252 63.9
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 1.9e-58 231.1 247 55.5
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 9.4e-58 228.8 252 63.1
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 3.6e-57 226.9 149 75.2
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.0e-56 225.3 128 86.7
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.3e-56 224.2 314 54.1
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 2.0e-55 221.1 128 84.4
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 2.0e-52 211.1 466 43.6
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 3.6e-49 200.3 128 79.7
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 7.2e-42 176.0 354 42.7
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-36 158.7 84 89.3
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 5.0e-35 153.3 476 32.4
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 1.0e-27 129.0 165 49.1
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 5.2e-24 116.7 279 33.0
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.9e-22 110.9 112 61.6
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 3.7e-22 110.5 148 46.6
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 6.4e-22 109.8 130 64.6
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 7.0e-21 106.3 115 59.1
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.0e-20 104.8 72 72.2
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.6e-19 99.8 66 75.8
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.4e-16 92.0 64 76.6
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.7e-14 84.0 78 64.1
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 1.1e-13 82.4 88 52.3
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 2.4e-13 81.3 91 50.5
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.2e-12 79.0 93 64.5
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.7e-11 75.1 380 27.6
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 1.5e-10 72.0 50 68.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 3.3e-10 70.9 324 28.4
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 1.3e-06 58.9 163 39.3


User provided reference genes

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