Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.2e-64 247.3 123 100.0
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.4e-63 246.1 123 99.2
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 5.8e-62 240.7 123 96.7
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.4e-61 236.9 123 95.1
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.4e-60 235.3 123 94.3
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 7.1e-60 233.8 123 93.5
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 9.2e-60 233.4 123 92.7
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-59 232.6 123 93.5
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-59 231.5 123 92.7
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-59 231.5 123 92.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 3.5e-59 231.5 123 92.7
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-59 231.1 123 92.7
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 94.4
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 4.6e-59 231.1 123 92.7
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 93.5
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 7.8e-59 230.3 123 92.7
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 7.8e-59 230.3 123 92.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.0e-58 229.9 123 92.7
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-58 229.6 124 93.5
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 3.9e-58 228.0 124 93.5
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 5.1e-58 227.6 124 92.7
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.9e-57 225.7 124 92.7
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 4.3e-57 224.6 124 90.3
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.6e-57 224.2 124 90.3
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.6e-57 224.2 124 90.3
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.6e-57 224.2 124 90.3
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-56 221.5 124 89.5
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.6e-56 221.5 124 89.5
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 6.2e-56 220.7 124 89.5
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.9e-50 201.4 124 83.9
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.8e-45 184.9 126 77.0
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.1e-44 183.3 126 73.8
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.2e-44 181.4 126 75.4
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 73.8
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-42 176.4 126 73.0
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 73.0
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.9e-33 146.0 132 62.9
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-30 136.7 123 64.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.9e-29 131.3 127 59.8
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 5.3e-23 111.3 125 49.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 3.8e-21 105.1 137 48.2
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.5e-21 104.4 102 54.9
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.1e-20 103.6 121 49.6
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 3.2e-20 102.1 134 48.5
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.2e-20 101.7 122 48.4
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 9.3e-20 100.5 121 47.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.6e-19 99.8 126 49.2
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.6e-19 99.8 119 47.1
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 2.7e-19 99.0 122 48.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 6.1e-19 97.8 136 48.5
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 7.9e-19 97.4 132 45.5
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.8e-18 96.3 138 43.5
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.8e-18 96.3 137 44.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.8e-18 96.3 137 44.5
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 3.0e-18 95.5 124 46.0
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 3.9e-18 95.1 135 43.0
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.9e-18 95.1 122 46.7
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 3.9e-18 95.1 122 45.9
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 5.1e-18 94.7 123 45.5
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 5.1e-18 94.7 126 43.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 8.8e-18 94.0 127 47.2
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 8.8e-18 94.0 126 46.8
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-17 93.6 133 45.1
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.5e-17 93.2 140 43.6
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.5e-17 93.2 123 46.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.5e-17 93.2 131 50.4
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.9e-17 92.8 121 43.8
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.9e-17 92.8 122 45.1
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.5e-17 92.4 127 45.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.5e-17 92.4 117 45.3
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.3e-17 92.0 126 43.7
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.3e-17 92.0 126 42.9
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.3e-17 92.0 123 43.9
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.3e-17 91.7 146 41.8
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 4.3e-17 91.7 121 43.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 4.3e-17 91.7 115 46.1
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.3e-16 90.1 134 42.5
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.7e-16 89.7 133 46.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 2.2e-16 89.4 121 44.6
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.2e-16 89.4 122 45.1
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.8e-16 89.0 124 42.7
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.8e-16 89.0 125 47.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.8e-16 89.0 122 44.3
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.7e-16 88.6 129 46.5
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.7e-16 88.6 134 42.5
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.7e-16 88.6 126 44.4
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 4.8e-16 88.2 117 44.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 4.8e-16 88.2 126 42.1
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 8.2e-16 87.4 127 43.3
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-15 87.0 128 43.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 126 42.9
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.4e-15 86.7 119 45.4
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 3.1e-15 85.5 128 40.6
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-15 85.5 129 42.6
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-15 85.5 129 42.6
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-15 85.5 129 42.6
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.1e-15 85.5 133 38.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.1e-15 85.1 128 44.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 6.9e-15 84.3 126 42.1
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.9e-15 84.3 129 39.5
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 9.1e-15 84.0 131 42.7
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 9.1e-15 84.0 131 40.5
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 9.1e-15 84.0 119 43.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 9.1e-15 84.0 124 44.4
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.2e-14 83.6 123 43.9
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-14 82.4 128 38.3
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.4e-14 82.0 123 45.5
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.4e-14 82.0 144 41.0
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.5e-14 81.6 130 41.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 4.5e-14 81.6 131 42.7
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.5e-14 81.6 130 41.5
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.9e-14 81.3 81 58.0
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 7.7e-14 80.9 134 41.8
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.7e-14 80.9 136 40.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.3e-13 80.1 131 40.5
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 2.2e-13 79.3 125 40.8
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 2.2e-13 79.3 127 42.5
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 2.9e-13 79.0 135 42.2
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.8e-13 78.6 112 43.8
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 3.8e-13 78.6 112 43.8
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 6.5e-13 77.8 123 41.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 6.5e-13 77.8 123 41.5
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 8.5e-13 77.4 130 36.9
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 8.5e-13 77.4 130 36.9
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 8.5e-13 77.4 130 36.9
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.5e-13 77.4 129 40.3
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.9e-12 76.3 62 59.7
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.9e-12 76.3 124 41.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 3.2e-12 75.5 130 38.5
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.5e-12 74.7 129 38.8
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 9.4e-12 73.9 130 40.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 9.4e-12 73.9 121 38.0
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-11 73.6 127 37.8
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-11 73.6 130 35.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 127 37.8
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.1e-11 71.2 127 37.0
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 6.1e-11 71.2 125 40.8
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.1e-11 71.2 122 41.0
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 7.9e-11 70.9 112 45.5
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.0e-10 70.5 125 36.0
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 5.1e-10 68.2 129 34.9
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.1e-10 68.2 119 38.7
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 6.7e-10 67.8 134 36.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 6.7e-10 67.8 120 40.0
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.1e-09 67.0 123 39.8
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.5e-09 66.6 127 40.9
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.5e-09 66.6 121 39.7
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.5e-09 66.6 117 38.5
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.0e-09 66.2 116 31.9
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.6e-09 65.9 122 37.7
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 4.4e-09 65.1 119 35.3
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 5.7e-09 64.7 113 42.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 7.4e-09 64.3 114 39.5
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 7.4e-09 64.3 122 36.9
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.4e-09 64.3 112 40.2
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 9.7e-09 63.9 158 31.6
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-08 63.5 112 38.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-08 63.5 114 38.6
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 1.7e-08 63.2 100 39.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.2e-08 62.8 112 38.4
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 115 39.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.8e-08 61.6 116 36.2
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 6.3e-08 61.2 112 42.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 6.3e-08 61.2 48 54.2
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 6.3e-08 61.2 113 39.8
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.2e-08 60.8 110 40.9
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.2e-08 60.8 81 44.4
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.4e-07 60.1 109 42.2
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.8e-07 59.7 113 37.2
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 2.4e-07 59.3 59 40.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-07 58.9 116 37.1
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-07 58.9 116 37.1
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 3.1e-07 58.9 111 36.0
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-07 58.5 37 62.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.1e-07 58.5 113 33.6
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 5.3e-07 58.2 116 36.2
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 9.1e-07 57.4 106 34.9
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-06 56.6 163 30.7
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 2.6e-06 55.8 107 35.5
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.6e-06 55.8 83 39.8
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 3.4e-06 55.5 109 36.7
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 3.4e-06 55.5 48 45.8


User provided reference genes

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