Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 2.4e-120 435.6 245 100.0
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 3.7e-92 342.0 237 83.1
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.5e-82 310.1 249 76.7
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.9e-81 305.8 243 77.8
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 4.7e-79 298.5 243 70.0
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 2.4e-75 286.2 238 69.3
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 2.0e-74 283.1 238 68.9
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 3.2e-72 275.8 241 70.1
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 5.5e-72 275.0 239 73.6
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 5.5e-72 275.0 243 67.9
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 1.2e-71 273.9 229 68.6
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-71 273.5 238 67.2
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 1.6e-71 273.5 238 67.2
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 2.7e-71 272.7 241 69.7
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 5.2e-70 268.5 252 70.2
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 3.3e-69 265.8 239 67.4
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 5.7e-69 265.0 239 67.4
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-63 246.9 241 68.0
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 1.6e-63 246.9 241 68.0
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 6.8e-62 241.5 240 65.8
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 6.8e-62 241.5 240 65.8
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 2.8e-47 193.0 180 65.0
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 4.4e-45 185.7 248 56.9
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 3.3e-40 169.5 246 56.1
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 1.4e-35 154.1 194 54.1
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 6.2e-31 138.7 245 44.9
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 2.0e-29 133.7 185 51.9
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 4.4e-29 132.5 245 48.6
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 2.2e-28 130.2 198 49.5
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 1.9e-27 127.1 227 46.3
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 5.4e-27 125.6 184 48.9
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 1.2e-26 124.4 191 49.7
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 3.5e-26 122.9 180 50.0
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.0e-25 121.3 187 48.7
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 5.1e-25 119.0 185 47.0
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 8.6e-25 118.2 184 49.5
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 2.5e-24 116.7 189 46.6
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.5e-24 116.7 184 46.7
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 4.3e-24 115.9 245 40.8
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 2.1e-23 113.6 198 47.5
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 4.7e-23 112.5 241 44.4
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 1.1e-22 111.3 180 46.7
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 4.0e-22 109.4 184 47.3
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 8.9e-22 108.2 201 44.8
BcaC06g36320 Brassica carinata HOM05D003331 ORTHO05D003264 1.2e-21 107.8 244 40.6
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 2.6e-21 106.7 245 41.2
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 2.6e-21 106.7 245 41.2
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.6e-21 106.7 184 45.1
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.8e-21 105.5 177 46.3
C07p05420 Brassica napus HOM05D003331 ORTHO05D003264 1.3e-20 104.4 245 40.8
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.3e-20 104.4 183 44.8
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.9e-20 103.2 188 43.6
BolC7t40942H Brassica oleracea HOM05D003331 ORTHO05D003264 4.9e-20 102.4 245 40.4
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 6.4e-20 102.1 184 43.5
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 1.1e-19 101.3 187 42.8
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 4.1e-19 99.4 182 44.5
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 4.1e-19 99.4 184 44.0
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 5.4e-19 99.0 191 45.5
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 7.1e-19 98.6 190 43.2
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 9.2e-19 98.2 182 45.1
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.6e-18 97.4 182 42.9
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 2.7e-18 96.7 242 38.4
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 2.7e-18 96.7 144 45.1
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 6.0e-18 95.5 185 44.9
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.3e-17 94.4 185 41.6
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.3e-17 94.4 190 41.1
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 1.7e-17 94.0 202 39.1
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 2.3e-17 93.6 182 43.4
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 2.3e-17 93.6 182 43.4
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 3.9e-17 92.8 189 45.0
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 3.9e-17 92.8 189 42.3
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 5.6e-16 89.0 184 40.8
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 9.6e-16 88.2 192 41.7
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 1.6e-15 87.4 178 40.4
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 3.6e-15 86.3 183 42.1
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 4.7e-15 85.9 180 38.9
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 2.4e-14 83.6 203 40.4
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 5.2e-14 82.4 186 41.9
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 5.2e-14 82.4 212 39.6
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 4.4e-13 79.3 209 37.3
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 7.6e-13 78.6 180 39.4
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 9.9e-13 78.2 181 38.7
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 3.8e-12 76.3 184 40.2
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 6.4e-12 75.5 193 38.9
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 6.4e-12 75.5 214 36.0
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 1.1e-11 74.7 180 38.3
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.1e-11 74.7 182 39.0
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 1.4e-11 74.3 213 38.5
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.9e-11 73.9 191 39.3
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.9e-11 73.9 189 39.2
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 4.2e-11 72.8 212 38.7
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 7.1e-11 72.0 201 36.8
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 9.3e-11 71.6 193 38.3
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 2.1e-10 70.5 177 39.5
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.6e-10 69.3 189 38.1
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 6.0e-10 68.9 191 36.1
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 6.0e-10 68.9 166 40.4
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 2.3e-09 67.0 185 38.4
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.3e-09 67.0 184 36.4
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 3.0e-09 66.6 188 37.8
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 3.0e-09 66.6 197 32.5
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.9e-09 66.2 219 36.5
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 5.1e-09 65.9 175 35.4
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 5.1e-09 65.9 180 37.2
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 8.7e-09 65.1 185 37.3
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 1.1e-08 64.7 184 38.6
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 1.5e-08 64.3 189 37.0
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 1.5e-08 64.3 222 35.6
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 1.5e-08 64.3 190 36.8
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 1.5e-08 64.3 175 37.7
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 1.9e-08 63.9 181 37.6
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.5e-08 63.5 181 35.4
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 2.5e-08 63.5 184 38.6
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 2.5e-08 63.5 177 32.8
Rhsim10G0207400 Rhododendron simsii HOM05D003331 ORTHO05D003264 3.3e-08 63.2 183 36.6
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.3e-08 62.8 181 35.4
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 5.6e-08 62.4 215 34.9
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.3e-08 62.0 213 36.6
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.3e-08 62.0 178 36.5
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 7.3e-08 62.0 185 32.4
Prupe.1G361100 Prunus persica HOM05D003331 ORTHO05D003264 9.6e-08 61.6 199 35.7
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.3e-07 61.2 205 35.1
Sc03g0003730 Simmondsia chinensis HOM05D003331 ORTHO05D003264 1.6e-07 60.8 185 35.1
CiPaw.08G068400 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.8e-07 60.1 187 33.2
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 3.6e-07 59.7 198 35.4
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 3.6e-07 59.7 187 32.6
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 4.8e-07 59.3 187 36.9
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 6.2e-07 58.9 189 34.9
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 1.1e-06 58.2 180 35.6
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.1e-06 58.2 150 36.0
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 1.4e-06 57.8 134 40.3
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 1.8e-06 57.4 185 33.0
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 1.8e-06 57.4 53 66.0
SalBow3G2852 Salvia bowleyana HOM05D003331 ORTHO05D003264 1.8e-06 57.4 53 66.0
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 2.4e-06 57.0 201 33.8
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 4.0e-06 56.2 213 32.9
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 4.0e-06 56.2 206 34.5
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 5.3e-06 55.8 186 33.3
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 9.0e-06 55.1 219 34.2
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 9.0e-06 55.1 176 34.7
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 9.0e-06 55.1 184 35.9


User provided reference genes

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