Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 2.3e-174 615.9 434 100.0
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.1e-99 367.9 375 70.1
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 3.2e-99 366.3 383 68.7
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 3.7e-95 352.8 369 69.9
Carub.0003s3263 Capsella rubella HOM05D003405 ORTHO05D003920 1.2e-93 347.8 332 73.8
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 2.6e-85 320.1 404 49.3
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 2.6e-85 320.1 404 49.3
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 1.9e-83 313.9 411 52.6
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 4.2e-83 312.8 389 49.6
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 2.1e-82 310.5 389 49.4
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 1.0e-81 308.1 402 52.5
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 3.0e-81 306.6 410 52.0
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 1.2e-80 304.7 408 57.8
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 4.8e-79 299.3 408 51.2
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 4.8e-79 299.3 408 51.2
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.1e-78 298.1 408 51.5
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 1.1e-78 298.1 420 50.2
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 2.4e-78 297.0 399 55.6
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 3.1e-78 296.6 400 51.0
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 3.1e-78 296.6 412 50.5
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 9.1e-78 295.0 400 49.5
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 1.2e-77 294.7 413 51.1
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 1.6e-77 294.3 398 47.0
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 2.0e-77 293.9 411 50.6
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 2.0e-77 293.9 401 48.4
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 2.7e-77 293.5 416 50.0
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 2.7e-77 293.5 416 47.4
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 4.5e-77 292.7 423 49.6
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 4.5e-77 292.7 399 47.4
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 7.7e-77 292.0 396 55.6
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 2.9e-76 290.0 376 47.6
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 6.5e-76 288.9 399 47.4
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 6.5e-76 288.9 401 48.1
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 1.5e-75 287.7 400 48.0
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 1.5e-75 287.7 399 47.6
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 3.2e-75 286.6 401 47.1
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 3.6e-74 283.1 390 43.1
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 4.7e-74 282.7 405 50.6
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 8.0e-74 282.0 398 46.5
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 8.0e-74 282.0 398 46.7
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 4.0e-73 279.6 400 41.8
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 5.2e-73 279.3 313 48.9
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 5.2e-73 279.3 402 53.0
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 6.8e-73 278.9 399 40.9
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 1.5e-72 277.7 406 52.7
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 2.0e-72 277.3 400 41.0
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 3.4e-72 276.6 391 46.5
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 4.4e-72 276.2 401 52.4
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 7.5e-72 275.4 398 46.7
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 9.8e-72 275.0 401 54.6
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 9.8e-72 275.0 406 45.1
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 1.3e-71 274.6 401 44.9
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.9e-71 272.7 402 43.3
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 6.3e-71 272.3 398 45.5
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 6.3e-71 272.3 404 45.5
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 8.3e-71 271.9 404 45.0
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 1.8e-70 270.8 405 45.2
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 2.4e-70 270.4 413 47.7
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 5.4e-70 269.2 391 47.1
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 7.0e-70 268.9 411 47.7
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 7.0e-70 268.9 407 45.9
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 3.5e-69 266.5 401 53.1
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 3.5e-69 266.5 410 43.9
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 1.7e-68 264.2 383 57.2
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 1.7e-68 264.2 383 57.2
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 2.9e-68 263.5 403 45.4
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 3.8e-68 263.1 346 47.7
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 3.8e-68 263.1 399 45.4
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 6.6e-68 262.3 405 48.1
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.1e-67 261.5 396 51.8
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 1.9e-67 260.8 399 44.6
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.9e-67 260.8 396 52.0
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 1.9e-67 260.8 419 39.1
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 2.5e-67 260.4 348 61.5
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 3.3e-67 260.0 398 52.3
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 1.6e-66 257.7 346 47.7
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 4.7e-66 256.1 383 49.3
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 1.8e-65 254.2 391 52.2
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 3.0e-65 253.4 383 49.3
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 3.0e-65 253.4 295 45.8
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 4.0e-65 253.1 379 55.7
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 5.2e-65 252.7 412 42.0
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.2e-64 251.5 411 39.4
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 4.4e-64 249.6 302 48.0
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 7.5e-64 248.8 427 44.3
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 1.3e-63 248.1 403 43.9
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 2.2e-63 247.3 376 40.2
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.9e-63 246.9 344 41.3
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 2.9e-63 246.9 376 40.4
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 4.1e-62 243.0 385 39.2
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 7.0e-62 242.3 296 44.9
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 1.2e-61 241.5 424 37.7
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 1.2e-61 241.5 401 42.9
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-61 240.7 415 38.1
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.7e-61 240.4 447 36.5
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 4.6e-61 239.6 405 48.1
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 4.6e-61 239.6 343 49.6
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 7.8e-61 238.8 380 39.5
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 1.0e-60 238.4 386 56.0
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 1.9e-59 234.2 392 49.5
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 4.3e-59 233.0 402 38.3
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 2.8e-58 230.3 347 39.8
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 3.6e-58 229.9 389 38.0
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 3.6e-58 229.9 388 37.9
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 3.6e-58 229.9 462 36.4
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.8e-57 227.6 419 48.2
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.8e-57 227.6 416 47.6
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 3.1e-57 226.9 398 49.7
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.2e-56 224.9 424 35.1
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 2.6e-56 223.8 397 38.3
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 7.5e-56 222.2 296 58.8
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 1.7e-55 221.1 340 44.1
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 2.9e-55 220.3 251 46.2
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 6.4e-55 219.2 406 37.2
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 2.4e-54 217.2 398 37.4
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 9.2e-54 215.3 288 50.7
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 2.0e-53 214.2 250 47.2
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-53 214.2 343 39.1
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 2.7e-53 213.8 410 38.0
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 3.5e-53 213.4 392 38.8
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.5e-53 213.4 454 34.8
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 6.0e-53 212.6 260 46.2
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 6.0e-53 212.6 385 48.1
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 3.0e-52 210.3 410 38.5
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 5.0e-52 209.5 383 35.8
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 3.3e-51 206.8 309 38.2
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 5.6e-51 206.1 450 37.1
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 3.6e-50 203.4 234 47.9
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 4.4e-48 196.4 398 40.7
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.2e-47 194.1 318 38.7
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 3.7e-47 193.4 406 34.7
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 1.1e-46 191.8 300 53.3
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 1.9e-46 191.0 223 51.6
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 2.4e-46 190.7 403 33.5
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 3.2e-46 190.3 296 38.2
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 7.1e-46 189.1 283 41.3
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.2e-45 188.3 426 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 3.9e-44 183.3 411 42.3
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.5e-43 180.6 359 35.1
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 4.7e-42 176.4 429 35.2
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 3.1e-41 173.7 288 53.8
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 3.4e-40 170.2 188 46.8
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 3.4e-40 170.2 188 46.8
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.4e-40 169.9 461 41.2
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 7.6e-40 169.1 202 44.6
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.4e-38 164.9 385 31.4
HPP92_003102 Vanilla planifolia HOM05D003405 ORTHO05D003920 2.4e-38 164.1 256 38.7
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 1.2e-37 161.8 315 38.7
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.3e-36 158.3 317 34.4
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 1.3e-36 158.3 423 31.4
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 3.3e-35 153.7 242 51.2
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 4.3e-35 153.3 383 38.4
Cre01.g035000 Chlamydomonas reinhardtii HOM05D003405 ORTHO05D003920 1.2e-34 151.8 337 33.8
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 3.6e-34 150.2 419 35.6
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 5.2e-33 146.4 275 35.3
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 3.4e-32 143.7 374 36.6
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 1.7e-31 141.4 260 35.8
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 2.9e-31 140.6 254 33.9
VMungo0540G1027 Vigna mungo HOM05D003405 ORTHO05D003920 8.4e-31 139.0 167 43.7
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.4e-30 138.3 285 36.5
MCO01G177 Micromonas commoda HOM05D003405 ORTHO05D003920 7.3e-27 125.9 299 29.8
Cfa021699 Carpinus fangiana HOM05D003405 ORTHO05D003920 1.3e-26 125.2 232 32.8
PRCOL_00001431 Prasinoderma coloniale HOM05D003405 ORTHO05D003920 7.6e-24 115.9 318 29.6
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 3.2e-22 110.5 252 34.9
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 4.2e-22 110.2 144 56.9
CSS0037270 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.0e-20 104.0 165 39.4
arahy.Tifrunner.gnm1.ann1.98W4LT Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-19 101.7 165 40.6
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.5e-13 80.5 427 24.4
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 7.9e-13 79.3 79 58.2
BcaNung02686 Brassica carinata HOM05D003405 ORTHO05D003920 1.0e-12 79.0 63 58.7
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 1.8e-12 78.2 69 60.9
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 3.0e-12 77.4 88 44.3
SalBow7G4656 Salvia bowleyana HOM05D027942 ORTHO05D019643 6.7e-12 76.3 89 46.1
Psat2g004000 Pisum sativum HOM05D003405 ORTHO05D003920 1.5e-11 75.1 124 41.1
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 3.7e-10 70.5 147 32.7
CSS0047421 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 6.2e-10 69.7 150 35.3
arahy.Tifrunner.gnm1.ann1.N6YQ7G Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-09 68.9 65 52.3
BcaC01g00578 Brassica carinata HOM05D003405 ORTHO05D003920 6.9e-09 66.2 68 57.4
CSS0031848 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 9.0e-09 65.9 167 31.1
A01p03190 Brassica napus HOM05D003405 ORTHO05D003920 1.0e-07 62.4 34 85.3
PGSC0003DMG401005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.1e-06 58.9 52 50.0
BraA03t14247Z Brassica rapa HOM05D003405 ORTHO05D003920 2.5e-06 57.8 43 65.1
Atru.chr1.1032 Acer truncatum HOM05D003405 ORTHO05D003920 3.2e-06 57.4 122 33.6


User provided reference genes

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