Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 4.3e-110 401.4 205 100.0
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.9e-106 387.9 205 96.1
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 4.1e-105 384.8 205 95.1
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.5e-102 373.6 205 91.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.2e-101 373.2 205 91.2
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 3.6e-101 371.7 205 91.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 6.2e-101 370.9 205 91.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 6.2e-101 370.9 205 91.7
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.8e-100 369.4 205 91.2
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 3.1e-100 368.6 205 90.7
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.2e-100 367.9 205 90.7
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.1e-93 345.9 205 83.4
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 2.5e-86 322.4 204 77.5
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 7.3e-86 320.9 204 76.5
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.3e-85 320.1 204 77.5
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.1e-85 319.3 203 75.4
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.1e-84 317.0 204 74.5
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 3.1e-84 315.5 204 75.5
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 4.0e-84 315.1 204 75.0
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.4e-83 312.0 204 74.5
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 5.8e-83 311.2 204 73.0
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 7.6e-83 310.8 204 74.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 7.6e-83 310.8 204 74.0
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 9.9e-83 310.5 204 73.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.3e-82 310.1 204 74.5
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.3e-82 310.1 204 73.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.7e-82 309.7 204 74.0
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.7e-82 309.7 204 71.6
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 2.2e-82 309.3 204 76.5
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 2.9e-82 308.9 204 74.0
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 2.9e-82 308.9 204 74.5
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 2.9e-82 308.9 204 71.6
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.8e-82 308.5 202 73.8
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 3.8e-82 308.5 198 75.8
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 3.8e-82 308.5 204 73.0
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 3.8e-82 308.5 204 73.0
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 6.4e-82 307.8 204 73.0
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 8.4e-82 307.4 204 73.0
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 8.4e-82 307.4 203 71.9
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 8.4e-82 307.4 204 71.1
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.1e-81 307.0 204 72.5
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.1e-81 307.0 204 73.5
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.4e-81 306.6 204 74.0
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.4e-81 306.6 204 73.5
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.9e-81 306.2 204 73.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 2.4e-81 305.8 204 73.5
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.2e-81 305.1 204 71.6
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.2e-81 305.1 204 73.0
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.2e-81 305.1 204 72.1
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 5.4e-81 304.7 204 73.0
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 5.4e-81 304.7 204 74.5
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 7.1e-81 304.3 204 71.6
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.3e-81 303.9 206 72.8
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 9.3e-81 303.9 204 72.1
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 9.3e-81 303.9 204 72.1
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 9.3e-81 303.9 204 72.5
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.3e-81 303.9 204 71.6
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.2e-80 303.5 204 71.6
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.6e-80 303.1 204 70.6
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 3.5e-80 302.0 204 71.6
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.6e-80 301.6 204 72.1
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 4.6e-80 301.6 204 70.1
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 7.9e-80 300.8 204 69.6
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.0e-79 300.4 204 71.6
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.0e-79 300.4 204 72.1
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.0e-79 300.4 204 72.5
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.3e-79 300.1 204 73.5
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.8e-79 299.7 204 71.6
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-79 299.7 202 69.8
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 2.3e-79 299.3 204 70.1
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.0e-79 298.9 205 72.7
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.0e-79 298.9 205 68.3
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 6.7e-79 297.7 204 69.6
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 6.7e-79 297.7 204 70.6
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 8.7e-79 297.4 205 68.3
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.1e-78 297.0 204 68.6
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.5e-78 296.6 204 69.6
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 1.5e-78 296.6 204 69.1
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 2.5e-78 295.8 204 70.6
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 5.6e-78 294.7 205 67.3
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 5.6e-78 294.7 204 71.1
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 7.4e-78 294.3 241 63.1
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 7.4e-78 294.3 204 68.6
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.3e-77 293.5 205 67.3
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 1.3e-77 293.5 204 68.6
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 2.1e-77 292.7 205 67.3
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 2.1e-77 292.7 204 69.1
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 3.6e-77 292.0 204 67.6
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 6.2e-77 291.2 204 69.6
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 8.1e-77 290.8 204 66.7
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 8.1e-77 290.8 204 67.2
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.1e-76 290.4 205 66.3
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.8e-76 289.7 205 66.8
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 3.1e-76 288.9 204 69.1
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.1e-76 288.9 204 67.6
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 5.3e-76 288.1 204 69.1
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 6.9e-76 287.7 190 72.6
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.2e-75 287.0 204 67.6
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.2e-75 287.0 204 67.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-75 286.6 204 69.6
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 2.6e-75 285.8 204 68.6
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 3.4e-75 285.4 205 66.8
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 3.4e-75 285.4 205 66.8
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 9.9e-75 283.9 218 63.3
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 1.3e-74 283.5 219 63.0
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.9e-74 282.3 239 59.4
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.8e-74 282.0 211 64.5
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 8.4e-74 280.8 204 69.6
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.9e-73 279.6 199 71.9
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.4e-73 279.3 204 66.7
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 3.2e-73 278.9 188 72.3
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.2e-73 278.9 190 71.6
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 7.1e-73 277.7 190 71.6
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 2.7e-72 275.8 201 67.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 3.5e-72 275.4 204 65.7
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.0e-71 273.9 173 76.3
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 3.9e-71 271.9 204 64.2
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 6.7e-71 271.2 184 71.7
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.7e-71 271.2 196 68.9
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.5e-70 269.2 186 69.9
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 5.6e-70 268.1 274 54.7
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 6.2e-69 264.6 204 63.2
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.2e-69 264.6 222 59.9
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-68 263.1 204 62.3
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 2.4e-68 262.7 196 63.3
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 6.9e-68 261.2 204 64.7
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 9.0e-68 260.8 204 65.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.1e-65 253.8 204 59.3
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 7.1e-65 251.1 139 89.2
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 3.5e-64 248.8 182 67.0
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 4.6e-64 248.4 204 64.2
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.3e-63 246.1 203 59.1
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.0e-63 245.7 203 59.6
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 8.7e-63 244.2 204 59.8
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.3e-61 240.4 203 58.6
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.7e-61 238.8 203 57.6
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 5.3e-60 235.0 204 59.8
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.5e-57 226.1 191 59.7
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 3.2e-57 225.7 203 56.7
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.2e-57 225.3 184 62.5
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 7.2e-57 224.6 147 75.5
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.3e-55 219.5 204 57.8
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 3.9e-55 218.8 212 50.9
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 4.3e-54 215.3 138 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 1.3e-53 213.8 205 52.7
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.9e-50 202.6 207 54.1
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 3.2e-49 199.1 204 51.5
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 3.6e-48 195.7 138 65.9
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 6.1e-48 194.9 204 49.0
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 7.9e-48 194.5 205 47.8
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-46 190.7 187 53.5
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.1e-41 174.1 108 75.9
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-41 173.7 166 53.6
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.8e-39 166.8 122 66.4
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 6.3e-37 158.3 148 56.8
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 8.2e-37 157.9 105 70.5
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.5e-33 146.4 100 70.0
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 7.0e-28 128.3 82 74.4
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.6e-27 127.1 99 64.6
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 2.7e-27 126.3 199 36.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 6.8e-23 111.7 118 46.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 6.8e-23 111.7 118 46.6
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.8e-20 103.6 82 61.0
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.7e-18 97.1 85 57.6
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 5.5e-17 92.0 57 75.4
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 4.0e-15 85.9 99 45.5
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.0e-14 83.6 68 57.4
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 4.4e-14 82.4 74 52.7
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.7e-13 79.3 146 37.0
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.1e-12 77.8 59 64.4
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.0e-11 73.6 56 69.6
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.8e-07 60.5 122 36.9
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 8.9e-07 58.2 39 71.8


User provided reference genes

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