Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G34630 Arabidopsis thaliana HOM05D007387 ORTHO05D009321 7.9e-85 317.4 200 100.0
AL7G16570 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 7.2e-70 267.7 212 77.8
Sp7g32420 Schrenkiella parvula HOM05D007387 ORTHO05D009321 1.8e-49 199.9 212 54.7
Carub.0007s0565 Capsella rubella HOM05D007387 ORTHO05D009321 8.6e-47 191.0 213 56.8
A01p03860 Brassica napus HOM05D007387 ORTHO05D009321 9.5e-46 187.6 233 57.1
BraA01t00373Z Brassica rapa HOM05D007387 ORTHO05D009321 2.3e-44 183.0 218 54.1
BcaNung00681 Brassica carinata HOM05D007387 ORTHO05D009321 1.3e-42 177.2 220 54.1
C01p04170 Brassica napus HOM05D007387 ORTHO05D009321 3.7e-42 175.6 220 53.6
BolC1t00405H Brassica oleracea HOM05D007387 ORTHO05D009321 3.7e-42 175.6 220 53.6
BcaNung04919 Brassica carinata HOM05D007387 ORTHO05D009321 1.6e-40 170.2 219 51.1
CARHR242940 Cardamine hirsuta HOM05D007387 ORTHO05D009321 2.7e-40 169.5 219 56.6
BcaNung04916 Brassica carinata HOM05D007387 ORTHO05D009321 5.9e-40 168.3 219 50.7
Thhalv10026183m.g Eutrema salsugineum HOM05D007387 ORTHO05D009321 1.7e-39 166.8 224 51.8
Aa31LG2G15890 Aethionema arabicum HOM05D007387 ORTHO05D009321 2.8e-37 159.5 214 49.5
THA.LOC104807296 Tarenaya hassleriana HOM05D007387 ORTHO05D009321 1.1e-30 137.5 222 52.3
Cpa.g.sc139.28 Carica papaya HOM05D007387 ORTHO05D009321 6.0e-16 88.6 208 40.4
Thecc.02G078400 Theobroma cacao HOM05D007387 ORTHO05D009321 2.4e-12 76.6 183 41.5
Atru.chr5.3107 Acer truncatum HOM05D007387 ORTHO05D009321 8.9e-12 74.7 54 70.4
Ciclev10029309m.g Citrus clementina HOM05D007387 ORTHO05D009321 2.6e-11 73.2 196 39.3
ClCG02G004690 Citrullus lanatus HOM05D007387 ORTHO05D009321 9.9e-11 71.2 50 74.0
MELO3C013435.2 Cucumis melo HOM05D007387 ORTHO05D009321 9.9e-11 71.2 50 74.0
CsaV3_7G000220 Cucumis sativus L. HOM05D007387 ORTHO05D009321 9.9e-11 71.2 50 74.0
QL11p045571 Quercus lobata HOM05D007387 ORTHO05D009321 9.9e-11 71.2 53 67.9
CARHR106690 Cardamine hirsuta HOM05D007387 ORTHO05D009321 1.7e-10 70.5 54 63.0
Cfa005072 Carpinus fangiana HOM05D007387 ORTHO05D009321 1.7e-10 70.5 54 68.5
Sabra04G0107500 Salix brachista HOM05D007387 ORTHO05D009321 3.8e-10 69.3 207 34.3
TWI75G1034 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 3.8e-10 69.3 54 61.1
Sed0010335 Sechium edule HOM05D007387 ORTHO05D009321 6.4e-10 68.6 50 72.0
VMungo1127G0459 Vigna mungo HOM05D007387 ORTHO05D009321 6.4e-10 68.6 50 68.0
Glyma.12G039000 Glycine max HOM05D007387 ORTHO05D009321 8.4e-10 68.2 50 68.0
Potri.009G121700 Populus trichocarpa HOM05D007387 ORTHO05D009321 8.4e-10 68.2 205 39.5
Sed0000236 Sechium edule HOM05D007387 ORTHO05D009321 8.4e-10 68.2 50 72.0
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.9e-09 67.0 50 70.0
Gohir.A04G124100 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.9e-09 67.0 50 68.0
Gohir.D04G166200 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.9e-09 67.0 50 68.0
Gorai.012G154600 Gossypium raimondii HOM05D007387 ORTHO05D009321 1.9e-09 67.0 50 68.0
Phvul.011G041100 Phaseolus vulgaris HOM05D007387 ORTHO05D009321 1.9e-09 67.0 50 66.0
Gohir.D12G030300 Gossypium hirsutum HOM05D007387 ORTHO05D009321 2.4e-09 66.6 189 35.4
Manes.11G087600 Manihot esculenta HOM05D007387 ORTHO05D009321 2.4e-09 66.6 187 39.0
Duzib248G1112 Durio zibethinus HOM05D007387 ORTHO05D009321 3.2e-09 66.2 184 41.8
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.2e-09 66.2 50 68.0
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.2e-09 66.2 50 68.0
Duzib132G0100 Durio zibethinus HOM05D007387 ORTHO05D009321 4.1e-09 65.9 187 37.4
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 5.4e-09 65.5 50 68.0
Glyma.11G113100 Glycine max HOM05D007387 ORTHO05D009321 1.2e-08 64.3 50 66.0
MD10G1066200 Malus domestica HOM05D007387 ORTHO05D009321 1.2e-08 64.3 50 68.0
CiPaw.06G131100 Carya illinoinensis HOM05D007387 ORTHO05D009321 1.6e-08 63.9 50 64.0
PGR142G2532 Punica granatum HOM05D007387 ORTHO05D009321 2.1e-08 63.5 50 64.0
TWI31G1242 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 2.7e-08 63.2 54 59.3
TWI79G0383 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 2.7e-08 63.2 54 59.3
Prupe.8G088200 Prunus persica HOM05D007387 ORTHO05D009321 3.5e-08 62.8 50 66.0
Gohir.A12G041900 Gossypium hirsutum HOM05D007387 ORTHO05D009321 4.6e-08 62.4 188 37.8
Potri.004G160700 Populus trichocarpa HOM05D007387 ORTHO05D009321 4.6e-08 62.4 50 66.0
RcHm_v2.0_Chr6g0266971 Rosa chinensis HOM05D007387 ORTHO05D009321 4.6e-08 62.4 50 64.0
CANSAT11G0211 Cannabis sativa HOM05D007387 ORTHO05D009321 6.0e-08 62.0 51 64.7
Ca_20916_v3 Cicer arietinum L. HOM05D007387 ORTHO05D009321 6.0e-08 62.0 50 62.0
Eucgr.I01309 Eucalyptus grandis HOM05D007387 ORTHO05D009321 6.0e-08 62.0 50 62.0
MD05G1058600 Malus domestica HOM05D007387 ORTHO05D009321 6.0e-08 62.0 50 62.0
Lalb_Chr03g0025431 Lupinus albus HOM05D007387 ORTHO05D009321 1.0e-07 61.2 52 59.6
Medtr4g071120 Medicago truncatula HOM05D007387 ORTHO05D009321 1.0e-07 61.2 50 60.0
TPR.G30501 Trifolium pratense HOM05D000711 ORTHO05D000545 1.3e-07 60.8 50 60.0
Lj3g0012874 Lotus japonicus HOM05D007387 ORTHO05D009321 1.7e-07 60.5 50 62.0
Psat7g182600 Pisum sativum HOM05D007387 ORTHO05D009321 1.7e-07 60.5 50 60.0
Actinidia00563 Actinidia chinensis HOM05D001785 ORTHO05D001933 3.0e-07 59.7 50 60.0
Lalb_Chr19g0138881 Lupinus albus HOM05D007387 ORTHO05D009321 3.0e-07 59.7 50 62.0
Sabra09G0094000 Salix brachista HOM05D007387 ORTHO05D009321 3.0e-07 59.7 204 36.3
Actinidia11742 Actinidia chinensis HOM05D007387 ORTHO05D009321 6.6e-07 58.5 49 61.2
AL3G52630 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 6.6e-07 58.5 95 41.1
arahy.Tifrunner.gnm1.ann1.WH0Y0U Arachis hypogaea HOM05D007387 ORTHO05D009321 6.6e-07 58.5 50 60.0
CAN.G170.83 Capsicum annuum HOM05D007387 ORTHO05D009321 1.1e-06 57.8 187 36.4
Dinv42018 Davidia involucrata HOM05D007387 ORTHO05D009321 1.5e-06 57.4 50 58.0
Carub.0003s3021 Capsella rubella HOM05D007387 ORTHO05D009321 1.9e-06 57.0 154 35.7
Solyc01g110150.2 Solanum lycopersicum HOM05D007387 ORTHO05D009321 1.9e-06 57.0 50 58.0
Lsat_1_v5_gn_7_91901 Lactuca sativa HOM05D007387 ORTHO05D009321 2.5e-06 56.6 50 60.0
PGSC0003DMG400030970 Solanum tuberosum HOM05D007387 ORTHO05D009321 3.3e-06 56.2 50 54.0
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.3e-06 55.8 50 54.0
Sopen01g052310 Solanum pennellii HOM05D007387 ORTHO05D009321 4.3e-06 55.8 50 56.0
vmacro02067 Vaccinium macrocarpon HOM05D007387 ORTHO05D009321 9.6e-06 54.7 50 54.0


User provided reference genes

Program Settings