Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 2.5e-87 325.5 173 100.0
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 4.9e-83 311.2 173 96.5
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 1.6e-81 306.2 173 93.6
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.6e-81 306.2 173 94.2
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 3.5e-81 305.1 173 93.6
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 3.5e-81 305.1 173 93.1
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 1.3e-80 303.1 173 93.1
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 1.9e-79 299.3 173 91.9
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 4.3e-79 298.1 173 92.5
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 1.1e-77 293.5 173 90.8
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 1.9e-74 282.7 173 87.3
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 6.6e-72 274.2 173 83.2
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 7.6e-68 260.8 150 92.0
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.8e-64 249.6 173 75.1
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 3.0e-64 248.8 173 75.7
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 1.1e-63 246.9 173 75.7
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.5e-63 246.5 173 75.7
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 5.6e-63 244.6 173 75.1
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 5.6e-63 244.6 173 75.1
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 9.6e-63 243.8 173 75.1
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 9.6e-63 243.8 173 74.0
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 3.7e-62 241.9 175 75.4
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 3.7e-62 241.9 173 74.0
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 4.8e-62 241.5 173 74.0
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 8.1e-62 240.7 174 74.7
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 1.1e-61 240.4 175 74.9
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 1.4e-61 240.0 173 75.1
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 1.8e-61 239.6 175 74.9
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.8e-61 239.6 175 74.9
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 1.8e-61 239.6 173 75.1
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 2.4e-61 239.2 173 71.7
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.4e-61 239.2 173 74.0
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 2.4e-61 239.2 172 75.0
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 5.3e-61 238.0 173 74.0
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 6.9e-61 237.7 173 71.7
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.2e-60 236.9 173 71.1
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 2.0e-60 236.1 173 71.7
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.0e-60 236.1 181 71.8
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 3.4e-60 235.3 173 71.1
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 4.5e-60 235.0 173 72.3
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 5.8e-60 234.6 173 72.3
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 5.8e-60 234.6 173 71.7
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 5.8e-60 234.6 173 72.3
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 7.6e-60 234.2 173 71.7
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 1.3e-59 233.4 173 70.5
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 1.7e-59 233.0 173 71.7
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 2.9e-59 232.3 173 71.7
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 2.9e-59 232.3 173 71.7
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 3.8e-59 231.9 173 71.7
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 6.5e-59 231.1 173 69.9
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.4e-58 229.9 173 71.1
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 2.5e-58 229.2 164 73.2
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 3.2e-58 228.8 173 71.1
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 4.2e-58 228.4 165 73.3
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 7.1e-58 227.6 173 72.3
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 7.1e-58 227.6 173 72.3
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 1.6e-57 226.5 173 71.7
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 2.1e-57 226.1 163 73.0
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 2.7e-57 225.7 173 71.1
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 2.7e-57 225.7 173 69.9
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 3.5e-57 225.3 173 68.2
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 7.9e-57 224.2 173 69.9
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.0e-56 223.8 194 63.9
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 5.1e-56 221.5 160 75.0
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 8.7e-56 220.7 173 68.8
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 1.1e-55 220.3 173 68.8
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 2.5e-55 219.2 173 66.5
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 4.3e-55 218.4 165 69.1
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 5.7e-55 218.0 182 65.9
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 1.6e-54 216.5 150 73.3
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 2.1e-54 216.1 173 66.5
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 2.1e-54 216.1 173 68.2
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 3.7e-54 215.3 144 77.8
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 4.8e-54 214.9 173 68.2
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 4.8e-54 214.9 149 76.5
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 6.2e-54 214.5 173 66.5
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 9.0e-53 210.7 173 65.9
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 7.6e-52 207.6 141 78.7
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 6.5e-51 204.5 144 75.0
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.1e-50 203.8 144 72.9
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 3.2e-50 202.2 172 62.8
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 3.5e-49 198.7 150 72.0
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 1.0e-48 197.2 149 69.8
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 3.0e-48 195.7 173 65.3
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 3.0e-48 195.7 145 71.0
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 5.1e-48 194.9 174 64.4
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 1.5e-47 193.4 173 61.3
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 3.3e-47 192.2 116 87.1
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 5.7e-47 191.4 171 56.1
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 3.1e-45 185.7 144 66.7
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.3e-45 184.9 144 68.1
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 6.9e-45 184.5 142 69.7
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 3.4e-44 182.2 165 56.4
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 3.4e-44 182.2 168 58.9
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 5.9e-44 181.4 173 60.7
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.2e-41 173.7 99 91.9
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.1e-39 167.2 170 53.5
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 2.0e-39 166.4 111 75.7
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 7.7e-36 154.5 144 62.5
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.9e-35 152.5 120 67.5
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 1.1e-34 150.6 144 65.3
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.4e-32 143.7 121 62.8
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 3.0e-32 142.5 146 59.6
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 8.8e-32 141.0 123 61.0
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 1.3e-30 137.1 101 70.3
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 9.4e-26 120.9 170 40.0
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 9.4e-26 120.9 98 66.3
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 1.2e-25 120.6 89 69.7
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 3.6e-25 119.0 102 64.7
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.8e-24 116.7 88 71.6
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 2.0e-23 113.2 120 55.0
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 2.8e-22 109.4 159 39.6
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 3.7e-22 109.0 86 66.3
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 6.3e-22 108.2 95 63.2
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.6e-20 103.6 160 46.2
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 4.5e-20 102.1 105 58.1
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 1.3e-19 100.5 182 37.9
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 1.5e-18 97.1 86 66.3
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 4.0e-16 89.0 71 66.2
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.2e-15 87.4 105 54.3
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 3.1e-13 79.3 85 54.1
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.7e-12 76.3 58 69.0
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 1.3e-11 73.9 47 74.5
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 2.9e-11 72.8 57 63.2
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.1e-10 70.9 59 62.7
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 3.2e-10 69.3 116 41.4
BolC1t00423H Brassica oleracea HOM05D000123 ORTHO05D009958 4.2e-10 68.9 40 85.0
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 5.5e-10 68.6 58 60.3
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 4.7e-09 65.5 63 58.7


User provided reference genes

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