Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 7.2e-192 673.7 331 100.0
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.2e-185 652.1 331 96.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 9.8e-181 636.7 331 93.1
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 5.9e-178 627.5 330 92.7
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 6.1e-175 617.5 330 91.2
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.0e-174 616.7 331 90.9
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.4e-171 606.3 327 90.8
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 7.3e-160 567.4 358 80.4
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 1.3e-153 546.6 330 84.8
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 8.9e-150 533.9 322 79.8
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 3.4e-149 531.9 357 77.9
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 3.4e-149 531.9 357 78.4
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 5.6e-144 514.6 385 71.7
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 6.4e-140 501.1 332 74.4
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.0e-137 493.8 334 73.4
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.0e-137 493.8 334 73.4
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.0e-137 493.8 332 74.1
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.0e-137 492.3 326 74.2
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 8.6e-137 490.7 327 73.7
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.5e-136 489.2 333 71.2
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 3.3e-136 488.8 329 72.6
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 4.3e-136 488.4 333 71.8
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 2.6e-133 479.2 317 73.8
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.3e-132 476.9 335 71.0
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.4e-131 472.6 332 71.1
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.2e-131 471.9 338 69.5
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.4e-131 471.5 334 70.7
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.6e-130 469.9 329 70.5
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 2.7e-130 469.2 330 68.8
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.0e-129 467.2 306 72.9
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 6.6e-129 464.5 305 73.8
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.1e-128 463.8 329 68.1
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.5e-128 462.6 337 66.5
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.3e-128 462.2 306 71.9
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 7.3e-128 461.1 317 71.6
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 7.3e-128 461.1 324 69.1
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 9.6e-128 460.7 323 69.0
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 1.3e-127 460.3 306 72.9
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 4.8e-127 458.4 336 67.3
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.1e-126 457.2 332 67.5
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.4e-126 456.8 326 68.4
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.4e-126 456.8 337 65.9
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 2.4e-126 456.1 344 66.6
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 2.4e-126 456.1 334 65.6
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.1e-126 455.7 326 68.1
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 3.1e-126 455.7 308 72.1
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 4.0e-126 455.3 316 69.3
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 6.9e-126 454.5 332 68.7
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.5e-125 453.4 306 70.6
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 4.4e-125 451.8 306 70.6
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 5.8e-125 451.4 339 66.1
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 7.6e-125 451.1 328 69.2
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 9.9e-125 450.7 306 71.2
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.3e-124 450.3 313 70.6
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.7e-124 449.9 332 67.5
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 2.2e-124 449.5 332 65.7
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.2e-124 449.5 326 67.5
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.9e-124 449.1 297 73.1
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.4e-124 448.0 332 67.2
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.4e-124 448.0 332 66.9
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.1e-123 447.2 352 63.9
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.1e-123 447.2 332 67.5
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.1e-123 447.2 313 70.9
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 1.9e-123 446.4 328 67.1
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 2.4e-123 446.0 317 67.2
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 3.2e-123 445.7 316 67.1
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 4.2e-123 445.3 318 69.5
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 4.2e-123 445.3 312 69.2
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 6.0e-122 441.4 330 64.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 7.9e-122 441.0 363 60.3
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.3e-121 440.3 360 62.5
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.3e-121 439.5 304 69.1
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.3e-121 439.5 338 64.2
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 3.9e-121 438.7 318 67.0
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.9e-121 438.7 336 65.5
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 3.9e-121 438.7 340 62.9
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.1e-121 438.3 332 64.5
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 5.1e-121 438.3 312 68.9
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 8.7e-121 437.6 337 63.5
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.5e-120 436.8 309 67.0
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 4.3e-120 435.3 314 68.5
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 7.4e-120 434.5 302 67.9
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 1.6e-119 433.3 306 69.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 1.6e-119 433.3 312 66.7
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.6e-119 432.2 321 64.2
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.4e-117 425.6 336 62.2
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 4.5e-117 425.2 286 71.0
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 5.8e-117 424.9 317 65.6
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 3.8e-116 422.2 306 66.0
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.2e-115 418.7 279 73.1
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 2.1e-114 416.4 309 64.4
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 3.3e-112 409.1 310 62.6
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 2.1e-111 406.4 315 61.0
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 4.8e-111 405.2 279 69.9
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.8e-110 403.3 314 62.7
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 3.1e-110 402.5 322 62.7
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.2e-109 400.6 282 67.4
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.5e-109 400.2 355 55.8
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.0e-109 399.8 325 58.8
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.2e-108 396.4 318 62.3
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 2.9e-108 396.0 293 66.9
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.9e-107 393.3 309 60.8
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 3.2e-107 392.5 330 64.2
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 4.2e-107 392.1 287 64.5
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 2.7e-106 389.4 280 68.6
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 7.9e-106 387.9 318 59.7
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.0e-105 387.5 312 59.0
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.1e-104 384.0 260 71.2
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 1.9e-104 383.3 319 58.6
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 3.3e-104 382.5 273 70.0
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 5.7e-104 381.7 331 58.9
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 7.4e-104 381.3 319 58.6
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 7.4e-104 381.3 319 58.6
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 7.4e-104 381.3 343 59.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.6e-103 380.2 319 58.3
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 6.3e-103 378.3 319 58.6
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 8.2e-103 377.9 308 60.1
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.1e-102 377.5 322 57.5
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 4.1e-102 375.6 319 57.7
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.5e-101 373.6 319 57.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 4.5e-101 372.1 316 57.9
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.5e-96 357.1 332 58.1
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 1.5e-93 347.1 303 55.1
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 5.0e-92 342.0 304 53.0
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.1e-91 340.9 298 55.0
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 3.2e-91 339.3 363 49.0
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.1e-90 336.7 248 66.9
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.7e-90 336.3 281 56.6
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.0e-89 332.8 335 51.6
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 8.8e-89 331.3 329 55.9
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.1e-86 324.3 251 63.7
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 4.1e-86 322.4 312 50.6
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.2e-85 320.9 221 73.3
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.9e-83 313.5 219 71.2
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 3.2e-83 312.8 308 51.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 4.7e-82 308.9 334 46.7
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.8e-71 273.1 234 55.6
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.5e-67 260.0 280 47.9
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 5.5e-67 258.8 198 66.7
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.6e-66 257.3 318 49.1
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.4e-64 249.2 164 71.3
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.3e-52 210.3 165 57.6
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.3e-52 210.3 165 57.6
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.3e-51 206.1 140 70.7
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 5.6e-43 179.1 111 74.8
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.8e-41 174.1 324 32.1
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 7.5e-40 168.7 116 68.1
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.1e-38 162.9 167 55.1
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 6.0e-37 159.1 312 34.3
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 7.3e-35 152.1 301 31.6
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.5e-32 144.4 129 58.1
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.4e-30 137.1 164 46.3
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 4.0e-25 119.8 247 34.0
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 4.1e-22 109.8 170 41.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 5.1e-20 102.8 85 56.5
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.2e-16 91.7 282 27.7
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 1.6e-13 81.3 105 42.9
AUR62010421 Chenopodium quinoa HOM05D000030 ORTHO05D000031 9.3e-06 55.5 37 70.3


User provided reference genes

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