Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G33980 Arabidopsis thaliana HOM05D009953 ORTHO05D003195 1.2e-113 413.3 233 100.0
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 4.4e-87 325.1 217 79.7
Carub.0007s0642 Capsella rubella HOM05D009953 ORTHO05D003195 2.1e-73 279.6 234 67.5
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 2.7e-60 236.1 231 60.6
Sp7g31720 Schrenkiella parvula HOM05D009953 ORTHO05D003195 3.3e-58 229.2 202 63.9
Sp7g31710 Schrenkiella parvula HOM05D009953 ORTHO05D003195 4.3e-58 228.8 202 65.3
Thhalv10026267m.g Eutrema salsugineum HOM05D009953 ORTHO05D003195 6.7e-51 204.9 181 67.4
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 1.5e-47 193.7 195 57.9
BcaC01g00943 Brassica carinata HOM05D009953 ORTHO05D003195 1.3e-41 174.1 220 52.3
BolC3t20907H Brassica oleracea HOM05D009953 ORTHO05D003195 3.1e-40 169.5 189 57.1
BcaNung03354 Brassica carinata HOM05D000546 ORTHO05D000398 5.3e-40 168.7 201 57.7
BcaB03g11864 Brassica carinata HOM05D009953 ORTHO05D003195 1.0e-38 164.5 221 54.3
C07p60100 Brassica napus HOM05D009953 ORTHO05D003195 3.2e-37 159.5 238 49.2
BolC7t46450H Brassica oleracea HOM05D009953 ORTHO05D003195 3.2e-37 159.5 238 49.2
BraA01t00428Z Brassica rapa HOM05D009953 ORTHO05D003195 4.2e-37 159.1 184 57.1
BcaNung03785 Brassica carinata HOM05D009953 ORTHO05D003195 2.7e-36 156.4 176 58.0
A03p62520 Brassica napus HOM05D009953 ORTHO05D003195 2.7e-36 156.4 236 47.9
BolC1t00464H Brassica oleracea HOM05D009953 ORTHO05D003195 2.7e-36 156.4 176 58.0
C03p86190 Brassica napus HOM05D009953 ORTHO05D003195 1.0e-35 154.5 189 54.0
BraA03t15320Z Brassica rapa HOM05D009953 ORTHO05D003195 1.0e-35 154.5 236 46.6
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.1e-34 151.0 250 40.0
A08p17220 Brassica napus HOM05D009953 ORTHO05D003195 4.8e-33 145.6 184 55.4
BraA08t33685Z Brassica rapa HOM05D009953 ORTHO05D003195 4.8e-33 145.6 184 55.4
C01p04800 Brassica napus HOM05D009953 ORTHO05D003195 1.4e-32 144.1 172 55.8
THA.LOC104807270 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 2.4e-32 143.3 177 48.6
A01p04400 Brassica napus HOM05D009953 ORTHO05D003195 5.9e-31 138.7 133 66.2
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-15 87.4 120 42.5
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-15 87.4 110 41.8
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 2.0e-15 87.0 140 41.4
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 5.5e-13 79.0 116 44.8
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 5.5e-13 79.0 119 41.2
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.3e-10 69.7 103 42.7
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 4.4e-10 69.3 115 38.3
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.7e-10 68.9 103 42.7
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.7e-10 68.9 103 42.7
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 7.5e-10 68.6 82 39.0
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 9.7e-10 68.2 77 46.8
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.3e-09 67.8 77 41.6
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 2.2e-09 67.0 82 47.6
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 2.8e-09 66.6 88 40.9
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 3.7e-09 66.2 115 38.3
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 4.8e-09 65.9 77 40.3
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 6.3e-09 65.5 84 44.0
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 8.2e-09 65.1 118 37.3
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.4e-08 64.3 107 39.3
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 1.4e-08 64.3 109 36.7
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.8e-08 63.9 107 39.3
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 1.8e-08 63.9 224 29.9
Nitab4.5_0002543g0100 Nicotiana tabacum HOM05D011234 ORTHO05D003195 1.8e-08 63.9 178 31.5
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.4e-08 63.5 79 40.5
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 3.1e-08 63.2 77 41.6
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 4.1e-08 62.8 118 37.3
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 4.1e-08 62.8 119 36.1
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 4.1e-08 62.8 83 39.8
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 5.3e-08 62.4 215 28.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 5.3e-08 62.4 195 28.2
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 7.0e-08 62.0 78 41.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 9.1e-08 61.6 118 37.3
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 9.1e-08 61.6 77 44.2
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 9.1e-08 61.6 81 44.4
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 9.1e-08 61.6 125 36.0
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.2e-07 61.2 127 35.4
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.6e-07 60.8 76 44.7
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 2.0e-07 60.5 67 43.3
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 2.0e-07 60.5 67 43.3
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 2.0e-07 60.5 143 30.8
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 2.7e-07 60.1 65 47.7
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.7e-07 60.1 69 43.5
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.5e-07 59.3 93 39.8
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 4.5e-07 59.3 78 39.7
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 4.5e-07 59.3 118 32.2
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 5.9e-07 58.9 110 37.3
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 5.9e-07 58.9 70 44.3
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.9e-07 58.9 100 38.0
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 7.7e-07 58.5 112 35.7
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.0e-06 58.2 151 31.8
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 1.0e-06 58.2 170 30.6
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.0e-06 58.2 67 43.3
SalBow6G6536 Salvia bowleyana HOM05D011234 ORTHO05D003195 1.3e-06 57.8 114 39.5
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.7e-06 57.4 93 35.5
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.7e-06 57.4 100 39.0
Sp3g30140 Schrenkiella parvula HOM05D007915 ORTHO05D010216 1.7e-06 57.4 52 69.2
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.7e-06 57.4 177 29.9
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.2e-06 57.0 104 35.6
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.9e-06 56.6 95 31.6
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 3.8e-06 56.2 72 38.9
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 3.8e-06 56.2 119 36.1
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 3.8e-06 56.2 96 37.5
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.8e-06 56.2 128 36.7
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.0e-06 55.8 162 29.6
Oeu007289.1 Olea europaea HOM05D011234 ORTHO05D003195 5.0e-06 55.8 120 30.8
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 5.0e-06 55.8 84 40.5
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.5e-06 55.5 109 36.7
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 6.5e-06 55.5 224 30.8
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 6.5e-06 55.5 170 25.9
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 6.5e-06 55.5 90 40.0
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 8.5e-06 55.1 115 35.7
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 8.5e-06 55.1 102 40.2
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.5e-06 55.1 65 44.6
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 8.5e-06 55.1 89 39.3


User provided reference genes

Program Settings