Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 1.6e-70 269.2 133 100.0
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 2.9e-67 258.5 133 95.5
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 8.4e-67 256.9 133 95.5
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 8.4e-67 256.9 133 94.0
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 1.1e-66 256.5 133 95.5
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 1.4e-66 256.1 133 94.7
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 9.3e-66 253.4 133 93.2
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 3.1e-61 238.4 133 88.0
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 1.1e-58 229.9 137 84.7
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 6.5e-51 204.1 105 93.3
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 4.2e-50 201.4 133 70.7
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 5.5e-50 201.1 133 70.7
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 1.6e-49 199.5 133 70.7
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 2.1e-49 199.1 133 69.9
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 2.7e-49 198.7 133 68.4
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 3.6e-49 198.4 133 69.2
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 6.1e-49 197.6 133 69.2
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 1.0e-48 196.8 131 69.5
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 1.4e-48 196.4 133 68.4
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 1.4e-48 196.4 133 69.9
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 1.8e-48 196.1 133 69.9
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 2.3e-48 195.7 132 69.7
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 3.9e-48 194.9 133 67.7
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 3.9e-48 194.9 133 67.7
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 8.8e-48 193.7 133 68.4
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 8.8e-48 193.7 133 66.9
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 1.1e-47 193.4 133 67.7
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 1.5e-47 193.0 133 66.9
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 1.5e-47 193.0 133 69.2
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 2.0e-47 192.6 133 68.4
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 2.6e-47 192.2 127 69.3
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 2.6e-47 192.2 133 68.4
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 2.6e-47 192.2 133 66.9
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 5.7e-47 191.0 105 87.6
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 7.4e-47 190.7 133 66.2
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 1.3e-46 189.9 133 67.7
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.7e-46 189.5 130 67.7
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.8e-46 188.7 133 67.7
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.8e-46 188.7 133 67.7
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 2.8e-46 188.7 133 67.7
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 3.7e-46 188.3 128 68.8
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 3.7e-46 188.3 140 66.4
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 3.7e-46 188.3 133 64.7
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 3.7e-46 188.3 133 66.9
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 6.3e-46 187.6 132 66.7
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 6.3e-46 187.6 133 66.9
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 6.3e-46 187.6 133 66.2
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 8.2e-46 187.2 133 67.7
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 1.1e-45 186.8 133 66.2
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 1.1e-45 186.8 133 67.7
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 1.1e-45 186.8 133 67.7
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 2.4e-45 185.7 133 66.2
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 2.4e-45 185.7 133 66.2
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 4.1e-45 184.9 133 63.9
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 1.5e-44 183.0 133 63.9
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 3.5e-44 181.8 133 62.4
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 7.7e-44 180.6 139 64.7
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 2.9e-43 178.7 116 72.4
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 5.0e-43 177.9 128 64.1
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 8.5e-43 177.2 133 62.4
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 8.5e-43 177.2 133 65.4
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 7.2e-42 174.1 118 67.8
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 3.6e-41 171.8 113 69.9
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 6.1e-41 171.0 134 61.9
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 8.0e-41 170.6 128 60.2
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 2.3e-40 169.1 181 49.7
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 3.0e-40 168.7 133 59.4
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 8.8e-40 167.2 129 61.2
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 8.8e-40 167.2 129 61.2
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.1e-39 166.8 113 69.0
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 2.6e-39 165.6 133 57.1
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 1.7e-38 162.9 114 65.8
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 2.8e-38 162.2 114 64.9
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 2.0e-36 156.0 105 67.6
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 7.7e-36 154.1 101 68.3
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 2.2e-35 152.5 98 71.4
Duzib132G0979 Durio zibethinus HOM05D007407 ORTHO05D009298 1.1e-34 150.2 128 57.8
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 1.9e-34 149.4 128 58.6
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 9.4e-34 147.1 121 53.7
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 1.6e-33 146.4 127 52.0
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 2.1e-33 146.0 105 63.8
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 6.1e-33 144.4 92 71.7
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 1.0e-32 143.7 103 66.0
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 2.3e-32 142.5 100 65.0
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 4.0e-32 141.7 96 67.7
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 1.8e-29 132.9 121 54.5
Prupe.8G139500 Prunus persica HOM05D007407 ORTHO05D009298 2.5e-26 122.5 133 52.6
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 4.7e-25 118.2 110 46.4
Hma1.2p1_1023F.1_g248930 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 8.0e-25 117.5 133 50.4
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 5.2e-24 114.8 118 47.5
MCO15G608 Micromonas commoda HOM05D007407 ORTHO05D009298 1.7e-22 109.8 132 42.4
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 2.2e-22 109.4 111 45.9
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 7.0e-21 104.4 70 68.6
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 1.2e-20 103.6 102 50.0
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 1.2e-17 93.6 128 40.6
MD00G1205200 Malus domestica HOM05D007407 ORTHO05D009298 2.3e-16 89.4 63 68.3
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.2e-14 82.8 61 65.6
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 5.4e-13 78.2 83 43.4
unitig_747.g21223 Utricularia gibba HOM05D007407 ORTHO05D009298 1.1e-10 70.5 47 59.6
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 1.2e-07 60.5 68 42.6
Medtr2g093710 Medicago truncatula HOM05D007407 ORTHO05D009298 2.0e-07 59.7 103 35.0
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 4.9e-06 55.1 54 55.6


User provided reference genes

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