Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 3.2e-96 355.5 247 100.0
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 9.1e-83 310.8 217 79.7
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.1e-70 269.2 212 72.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-69 266.2 201 72.6
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-68 263.8 218 67.9
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.3e-68 263.8 218 67.9
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.3e-68 263.8 219 74.4
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 4.6e-66 255.4 219 76.7
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 3.9e-57 225.7 223 60.1
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.2e-52 209.9 203 60.6
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 8.4e-52 208.0 151 74.8
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 6.0e-50 201.8 203 58.6
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.3e-48 195.7 204 61.8
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 8.1e-47 191.4 223 52.9
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-44 184.1 195 56.9
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-43 181.0 210 52.4
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.3e-41 174.1 205 52.7
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-41 172.9 209 50.7
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 5.6e-40 168.7 208 50.0
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 9.6e-40 167.9 187 54.0
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 9.6e-40 167.9 199 51.3
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.6e-39 167.2 176 55.1
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 2.8e-39 166.4 210 49.0
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.4e-38 163.3 200 48.5
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 5.3e-38 162.2 205 47.8
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 6.9e-38 161.8 204 48.5
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 9.0e-38 161.4 206 49.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.5e-37 160.6 202 50.5
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.5e-37 160.6 190 53.2
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.5e-37 160.6 174 54.6
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.0e-37 160.2 192 51.0
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.0e-37 160.2 214 47.2
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.4e-37 159.5 174 52.9
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.4e-37 159.5 203 49.8
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 3.4e-37 159.5 202 50.5
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 3.4e-37 159.5 202 49.0
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 4.4e-37 159.1 202 47.5
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 4.4e-37 159.1 204 49.0
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.4e-37 159.1 202 46.5
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 5.8e-37 158.7 200 47.5
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.8e-37 158.7 173 53.2
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.8e-37 158.7 211 46.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.6e-37 158.3 202 48.0
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.6e-37 158.3 174 54.0
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 7.6e-37 158.3 211 47.9
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 7.6e-37 158.3 200 48.5
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 9.9e-37 157.9 203 48.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 9.9e-37 157.9 202 50.5
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.7e-36 157.1 207 46.4
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 2.2e-36 156.8 173 53.2
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.9e-36 156.4 202 48.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.9e-36 156.4 171 50.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.9e-36 156.4 209 48.3
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.9e-36 156.4 200 46.5
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.8e-36 156.0 202 49.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 4.9e-36 155.6 172 54.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 4.9e-36 155.6 210 45.7
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 8.4e-36 154.8 196 50.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-35 154.1 197 51.3
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-35 154.1 197 51.3
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.9e-35 153.7 173 52.0
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.9e-35 153.7 211 46.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.4e-35 153.3 204 46.1
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.2e-35 152.9 207 47.3
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 4.2e-35 152.5 204 49.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 4.2e-35 152.5 205 49.8
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 4.2e-35 152.5 183 49.7
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.2e-35 152.5 199 49.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 9.3e-35 151.4 203 47.8
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 9.3e-35 151.4 201 49.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.2e-34 151.0 200 47.0
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.6e-34 150.6 209 49.3
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.6e-34 150.6 226 42.0
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.6e-34 150.6 202 47.5
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 2.1e-34 150.2 192 53.1
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.1e-34 150.2 205 48.8
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.5e-34 149.4 172 51.7
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 4.6e-34 149.1 191 48.7
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.6e-34 149.1 230 43.0
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.7e-33 147.1 244 41.0
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.3e-33 146.7 174 52.9
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.3e-33 146.7 171 52.6
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.0e-33 146.4 211 45.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.0e-33 146.4 216 44.4
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.0e-33 146.4 191 48.7
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.9e-33 146.0 231 41.1
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.9e-33 146.0 172 51.2
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 5.1e-33 145.6 177 49.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 6.6e-33 145.2 170 48.2
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 8.7e-33 144.8 154 55.8
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.1e-32 144.4 227 41.4
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.1e-32 144.4 206 45.6
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.1e-32 144.4 172 49.4
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.5e-32 143.3 182 48.9
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 3.3e-32 142.9 227 41.4
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 5.6e-32 142.1 215 44.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 5.6e-32 142.1 153 54.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 5.6e-32 142.1 242 40.5
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 5.6e-32 142.1 180 48.3
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 7.3e-32 141.7 202 45.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 7.3e-32 141.7 201 46.3
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 1.6e-31 140.6 244 38.1
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.1e-31 140.2 172 48.8
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.8e-31 139.8 227 43.2
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 3.6e-31 139.4 239 41.4
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 4.8e-31 139.0 194 44.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.2e-31 138.7 176 49.4
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.4e-30 137.5 216 42.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 4.0e-30 136.0 207 46.9
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 5.3e-30 135.6 171 47.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 9.0e-30 134.8 239 44.4
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 9.9e-29 131.3 207 44.0
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.7e-28 130.6 153 52.3
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-28 130.6 193 47.2
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 3.8e-28 129.4 199 45.7
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 6.4e-28 128.6 86 81.4
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.4e-28 128.6 199 43.2
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-27 127.9 193 45.6
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 5.5e-27 125.6 197 42.1
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 2.1e-26 123.6 173 45.1
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 3.0e-25 119.8 202 40.6
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 3.0e-25 119.8 172 43.0
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 3.9e-25 119.4 183 43.7
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 8.7e-25 118.2 193 43.5
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.3e-24 115.9 228 38.2
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.1e-23 113.6 168 41.7
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.8e-23 113.2 226 38.5
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-22 110.9 58 96.6
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-22 110.9 58 96.6
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-22 110.9 58 96.6
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-22 110.9 58 96.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-22 110.2 68 82.4
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 3.1e-22 109.8 81 70.4
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 9.0e-22 108.2 56 98.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-21 107.8 60 90.0
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.2e-21 107.8 196 36.7
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-21 106.7 56 96.4
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 2.6e-21 106.7 56 96.4
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 3.8e-20 102.8 73 69.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 3.8e-20 102.8 181 37.6
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 6.5e-20 102.1 207 36.2
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.5e-20 102.1 105 53.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 9.3e-19 98.2 215 33.5
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.6e-18 97.4 234 34.6
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.6e-18 97.4 234 34.6
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 6.0e-18 95.5 54 88.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.0e-17 94.7 204 39.2
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 3.0e-17 93.2 189 40.2
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.9e-16 90.5 46 97.8
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-16 90.5 46 97.8
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 5.7e-16 89.0 144 44.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 9.6e-16 88.2 189 39.2
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 2.8e-15 86.7 141 41.1
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.4e-14 83.6 136 38.2
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.3e-12 77.8 152 36.2
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.5e-12 75.5 51 72.5
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.6e-10 70.9 145 37.9
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.6e-10 70.9 51 70.6
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 2.1e-10 70.5 50 74.0
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 4.6e-10 69.3 119 40.3
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 6.1e-10 68.9 38 89.5
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 6.7e-09 65.5 115 37.4
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.3e-08 63.2 127 35.4
A09p57370 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-07 60.8 34 91.2
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 8.2e-07 58.5 139 33.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.4e-06 57.8 53 56.6
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.9e-06 55.5 90 40.0


User provided reference genes

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