Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.4e-104 381.7 201 100.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 5.1e-100 367.9 201 96.0
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.8e-98 362.1 201 92.5
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 7.9e-93 344.0 196 90.8
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 8.2e-90 334.0 198 85.9
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.9e-88 327.8 202 85.1
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.6e-85 319.7 198 81.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.7e-85 318.9 202 81.2
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.3e-83 312.0 197 83.8
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 3.3e-83 312.0 207 77.8
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 3.3e-83 312.0 207 77.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.3e-83 312.0 197 83.8
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.7e-83 311.2 196 83.7
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.7e-83 311.2 196 83.7
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.5e-78 296.6 235 70.2
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.5e-78 295.8 173 87.3
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 4.7e-77 291.6 177 81.9
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.2e-71 272.7 174 78.2
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 5.0e-71 271.6 184 75.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.9e-70 269.6 191 70.2
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.9e-70 269.6 174 77.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 5.5e-70 268.1 174 77.0
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.1e-69 266.2 194 71.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.6e-69 265.4 188 70.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 6.1e-69 264.6 192 70.8
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.4e-68 263.5 191 69.1
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-68 263.1 169 78.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.8e-68 263.1 170 76.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.0e-68 262.3 187 70.1
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.0e-68 262.3 180 72.8
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.0e-68 261.9 177 72.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 5.2e-68 261.5 186 68.3
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.2e-67 260.4 164 78.0
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.5e-67 260.0 170 74.7
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.4e-67 258.5 178 71.9
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 9.8e-67 257.3 170 75.3
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.7e-66 256.5 187 69.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.2e-66 256.1 187 67.9
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.2e-66 256.1 184 71.7
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.2e-66 256.1 186 67.2
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.8e-66 255.8 188 70.2
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 6.3e-66 254.6 160 78.1
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.3e-66 254.6 185 69.2
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.8e-65 253.1 197 67.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.8e-65 253.1 180 71.1
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 5.4e-65 251.5 193 67.9
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 7.0e-65 251.1 173 71.1
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.2e-64 250.4 182 69.2
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.2e-64 250.4 186 66.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.6e-64 250.0 172 74.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.0e-64 249.6 195 65.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.7e-64 249.2 178 66.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.5e-64 248.8 184 70.1
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 4.5e-64 248.4 169 69.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.9e-64 248.1 194 64.9
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.9e-64 248.1 186 67.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 5.9e-64 248.1 173 70.5
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.7e-64 247.7 186 67.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.3e-63 246.1 167 71.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 3.8e-63 245.4 184 67.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.0e-63 245.0 191 62.3
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 5.0e-63 245.0 191 67.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 5.0e-63 245.0 150 78.7
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.6e-63 244.6 191 63.9
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.1e-62 243.8 166 69.3
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.9e-62 243.0 178 67.4
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.9e-62 243.0 189 65.6
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.9e-62 243.0 188 66.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 3.3e-62 242.3 177 68.4
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 3.3e-62 242.3 188 63.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.3e-62 242.3 178 66.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 5.5e-62 241.5 189 63.0
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 5.5e-62 241.5 191 66.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 7.2e-62 241.1 177 67.8
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.8e-61 239.2 159 73.6
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.6e-61 238.8 210 59.5
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.1e-61 238.0 191 62.8
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-60 237.3 198 63.6
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.3e-60 236.1 187 63.1
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 3.0e-60 235.7 194 63.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.0e-60 235.3 166 68.1
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 6.8e-60 234.6 203 58.6
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.9e-60 234.2 190 60.5
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.5e-59 233.4 197 59.4
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.5e-59 233.4 193 62.2
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.6e-59 232.6 169 68.0
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 4.4e-59 231.9 184 62.0
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 5.7e-59 231.5 181 65.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 5.7e-59 231.5 171 69.0
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 5.7e-59 231.5 197 61.4
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.7e-59 231.5 171 64.9
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 7.5e-59 231.1 169 68.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 9.8e-59 230.7 177 65.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 9.8e-59 230.7 183 64.5
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.7e-58 229.9 185 60.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 2.2e-58 229.6 164 68.3
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.7e-58 228.8 169 65.7
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.7e-58 228.8 169 65.7
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.9e-58 228.4 188 63.8
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 4.9e-58 228.4 187 64.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 8.3e-58 227.6 171 66.7
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-57 227.3 214 59.3
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-57 226.9 183 64.5
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 5.4e-57 224.9 187 63.6
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 9.2e-57 224.2 176 65.9
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.2e-57 224.2 195 57.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.2e-56 223.8 198 63.6
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.2e-56 223.8 173 65.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.6e-56 223.4 185 62.7
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-56 223.4 169 65.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.0e-56 223.0 210 57.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.7e-56 222.6 177 62.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.3e-55 219.5 176 67.0
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.8e-55 218.8 168 65.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.1e-54 217.2 150 71.3
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.1e-54 217.2 169 63.9
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.5e-54 216.9 160 66.9
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.1e-53 213.0 168 63.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-52 210.7 190 57.9
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.3e-50 203.8 195 56.9
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.3e-50 201.1 142 67.6
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 4.6e-48 195.3 160 61.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.6e-45 186.8 182 56.0
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 4.0e-44 182.2 146 62.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.2e-42 176.4 170 52.4
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.9e-42 176.0 220 46.4
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.2e-41 172.6 164 53.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.3e-39 166.4 163 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.3e-38 162.2 169 52.1
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.3e-36 156.4 99 77.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.5e-32 142.5 172 45.9
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 3.5e-32 142.5 93 72.0
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.0e-32 141.7 103 65.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.3e-31 140.6 110 63.6
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.6e-31 137.9 110 60.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-30 137.5 99 70.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 4.3e-30 135.6 95 69.5
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.6e-30 135.2 125 56.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.3e-30 134.8 84 73.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.2e-29 134.0 165 46.7
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.2e-29 131.7 165 43.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.2e-28 128.6 139 49.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.4e-25 119.8 101 60.4
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 9.2e-25 117.9 91 62.6
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.0e-23 114.4 83 69.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.2e-19 100.9 72 68.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.8e-19 98.6 138 43.5
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.3e-18 97.4 77 62.3
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.7e-18 97.1 63 79.4
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-16 90.5 66 68.2
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.5e-14 84.0 51 86.3
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.6e-13 79.3 137 32.8
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 9.9e-11 71.2 76 50.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.4e-09 67.4 44 72.7
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 6.0e-08 62.0 41 65.9
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.7e-07 58.2 96 37.5
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 1.9e-06 57.0 41 75.6
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 4.3e-06 55.8 61 52.5


User provided reference genes

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