Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 5.3e-209 730.7 354 100.0
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.1e-181 639.0 360 91.1
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 2.3e-175 619.0 355 87.0
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.8e-165 585.5 357 82.6
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 6.8e-156 554.3 335 83.6
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 8.9e-148 527.3 358 77.1
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 9.9e-147 523.9 359 76.3
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.1e-145 520.4 360 75.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 9.2e-145 517.3 357 75.6
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 5.1e-143 511.5 362 74.3
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 4.3e-142 508.4 359 74.7
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 4.3e-142 508.4 359 74.7
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.6e-141 506.5 364 75.0
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 8.1e-141 504.2 364 75.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 2.2e-138 496.1 366 74.0
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 2.2e-138 496.1 366 74.0
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 1.6e-128 463.4 363 69.4
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 3.0e-111 406.0 286 69.9
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.6e-104 383.6 293 64.8
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 2.3e-103 379.8 310 64.2
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.9e-102 376.7 275 69.1
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 5.7e-102 375.2 269 69.1
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 7.4e-102 374.8 331 60.4
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.3e-101 374.0 331 60.4
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.6e-101 373.6 331 60.1
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.2e-101 373.2 302 61.9
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.8e-101 372.9 273 67.8
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 4.8e-101 372.1 282 66.0
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.4e-100 369.8 207 80.2
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 3.1e-100 369.4 207 80.2
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.1e-100 369.4 207 80.2
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.1e-100 369.4 207 80.2
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 3.1e-100 369.4 311 60.5
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 6.9e-100 368.2 273 65.6
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.5e-99 367.1 292 64.4
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.6e-99 366.3 334 58.1
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.6e-99 366.3 281 63.7
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.5e-99 365.5 201 80.6
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 7.6e-99 364.8 205 79.5
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 1.3e-98 364.0 280 62.5
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 2.2e-98 363.2 205 80.5
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 5.0e-98 362.1 254 67.7
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 6.5e-98 361.7 240 71.7
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.5e-98 361.7 267 65.5
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.5e-98 361.3 282 63.5
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 8.5e-98 361.3 206 79.1
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 8.5e-98 361.3 293 62.5
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.4e-97 360.5 268 65.3
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 5.5e-97 358.6 307 60.3
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 5.5e-97 358.6 298 61.7
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 5.5e-97 358.6 291 61.2
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.2e-96 357.5 270 62.6
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 1.6e-96 357.1 308 60.7
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 6.1e-96 355.1 272 64.3
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.0e-95 354.4 205 77.1
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.0e-95 354.4 301 58.8
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.0e-95 354.4 263 66.5
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.4e-95 354.0 263 66.5
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 2.3e-95 353.2 311 58.5
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.9e-95 352.4 233 70.8
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 5.1e-95 352.1 309 57.9
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 1.1e-94 350.9 204 77.5
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.1e-94 350.9 291 60.1
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 1.5e-94 350.5 205 75.6
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.5e-94 350.5 206 76.7
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.9e-94 350.1 206 77.2
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 2.5e-94 349.7 253 66.4
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 3.3e-94 349.4 267 63.3
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 4.3e-94 349.0 288 60.1
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 5.7e-94 348.6 204 77.5
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 5.7e-94 348.6 206 76.7
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 1.3e-93 347.4 271 63.1
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 2.2e-93 346.7 294 61.2
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 2.2e-93 346.7 206 76.7
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.2e-93 346.7 201 79.1
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 2.8e-93 346.3 209 76.1
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 3.7e-93 345.9 204 77.5
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.7e-93 345.9 204 78.4
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 4.8e-93 345.5 206 76.2
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.1e-92 344.4 267 62.5
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.4e-92 344.0 229 69.9
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.8e-92 343.6 284 60.6
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.4e-92 343.2 165 95.2
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 2.4e-92 343.2 256 65.2
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.4e-92 343.2 206 76.2
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 4.1e-92 342.4 207 74.4
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 5.3e-92 342.0 276 62.3
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 5.3e-92 342.0 206 75.7
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 5.3e-92 342.0 278 61.2
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 9.1e-92 341.3 194 78.4
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.2e-91 340.9 205 74.1
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 2.0e-91 340.1 204 76.5
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 3.4e-91 339.3 201 77.6
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 3.4e-91 339.3 252 65.1
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.0e-90 337.8 294 59.9
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.7e-90 337.0 200 75.5
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.7e-90 337.0 206 74.8
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 6.5e-90 335.1 205 74.6
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 6.5e-90 335.1 226 69.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.4e-89 334.0 296 57.1
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.4e-89 334.0 204 74.5
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.9e-89 333.6 272 61.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 2.5e-89 333.2 237 66.7
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.5e-89 333.2 277 58.8
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 7.2e-89 331.6 256 62.9
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 9.4e-89 331.3 201 75.6
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.6e-88 330.5 203 74.4
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.7e-88 329.7 277 58.8
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.5e-86 323.9 204 70.6
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.4e-86 322.4 280 56.8
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.7e-85 320.5 232 66.4
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.7e-85 320.5 209 69.9
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.8e-85 319.7 209 69.9
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 6.3e-85 318.5 276 57.2
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 1.0e-82 311.2 258 59.3
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.9e-81 307.0 198 67.7
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 9.4e-81 304.7 205 68.3
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 9.7e-78 294.7 206 67.0
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.8e-77 293.1 235 56.2
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 7.2e-73 278.5 200 61.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 6.7e-71 271.9 195 61.0
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.5e-70 270.8 162 72.2
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 4.2e-65 252.7 159 71.1
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 4.2e-65 252.7 175 69.1
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.0e-63 246.5 151 70.2
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 6.8e-63 245.4 219 56.6
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 3.7e-61 239.6 137 78.1
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 3.7e-61 239.6 144 73.6
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 8.0e-56 221.9 207 50.7
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.0e-50 202.6 124 70.2
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 7.5e-46 188.7 148 60.1
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 5.4e-44 182.6 155 56.1
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 1.6e-43 181.0 175 49.1
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.8e-31 141.0 111 55.9
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.4e-23 114.0 83 57.8
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 6.0e-19 99.4 141 46.8
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.1e-17 95.1 64 73.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 7.3e-17 92.4 137 48.2
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 2.0e-14 84.3 138 42.0
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 5.8e-14 82.8 45 88.9
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.3e-13 81.6 134 43.3
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.8e-13 80.1 50 76.0
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 2.1e-11 74.3 92 47.8
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 1.5e-06 58.2 33 69.7
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.6e-06 55.8 40 57.5


User provided reference genes

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