Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 2.2e-120 436.0 285 100.0
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.3e-76 288.9 311 70.4
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 5.3e-74 282.0 297 74.7
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 1.6e-67 260.4 291 70.8
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.2e-54 217.6 303 63.4
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.4e-50 204.1 303 61.7
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 5.3e-50 202.2 290 41.4
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 7.6e-49 198.4 303 60.7
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 7.6e-49 198.4 303 60.1
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 1.3e-48 197.6 303 60.7
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.9e-47 193.7 301 61.1
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 2.5e-47 193.4 303 58.7
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.6e-46 190.7 302 55.0
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 4.6e-46 189.1 300 59.7
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 4.6e-46 189.1 308 58.1
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.8e-45 187.2 302 57.6
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.8e-45 187.2 302 57.6
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 8.7e-45 184.9 302 57.3
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 4.8e-43 179.1 309 46.9
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 1.1e-42 177.9 309 46.6
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 1.4e-42 177.6 298 46.3
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.4e-42 177.6 302 57.6
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.4e-42 176.8 302 56.0
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 4.1e-42 176.0 308 56.8
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.6e-41 173.3 308 55.5
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.3e-40 171.0 308 54.9
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 3.8e-40 169.5 308 51.3
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 3.8e-40 169.5 308 54.9
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.1e-39 167.9 299 55.9
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 2.5e-39 166.8 311 56.6
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 7.2e-39 165.2 297 45.1
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 7.2e-39 165.2 309 54.7
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 7.2e-39 165.2 308 53.6
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 9.4e-39 164.9 313 55.6
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 1.2e-38 164.5 301 54.5
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 1.6e-38 164.1 309 53.7
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 2.1e-38 163.7 297 55.6
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 2.7e-38 163.3 300 57.0
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 3.6e-38 162.9 298 44.0
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 3.6e-38 162.9 298 44.0
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 4.6e-38 162.5 309 54.0
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 4.6e-38 162.5 300 54.3
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 6.1e-38 162.2 308 54.2
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 6.1e-38 162.2 301 53.8
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 7.9e-38 161.8 298 56.4
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 7.9e-38 161.8 300 54.3
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 7.9e-38 161.8 311 55.3
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 1.0e-37 161.4 303 42.9
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 1.0e-37 161.4 303 42.9
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 1.4e-37 161.0 300 57.7
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 1.4e-37 161.0 297 57.6
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 2.3e-37 160.2 304 55.9
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 8.8e-37 158.3 309 54.7
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 1.1e-36 157.9 299 49.2
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.1e-36 157.9 305 55.7
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 1.5e-36 157.5 299 54.5
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 2.0e-36 157.1 299 50.2
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 2.0e-36 157.1 299 54.8
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 3.3e-36 156.4 299 54.5
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 4.3e-36 156.0 294 54.8
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 4.3e-36 156.0 299 55.2
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.7e-36 155.6 307 43.6
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.7e-36 155.6 307 43.6
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.7e-36 155.6 307 43.6
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 5.7e-36 155.6 297 55.2
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.8e-35 153.3 308 43.2
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 2.8e-35 153.3 300 54.3
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 4.8e-35 152.5 300 55.0
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 4.8e-35 152.5 299 54.8
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 4.8e-35 152.5 298 54.0
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 4.8e-35 152.5 300 54.3
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 4.8e-35 152.5 306 54.9
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 4.8e-35 152.5 306 54.9
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 6.3e-35 152.1 303 54.1
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 8.2e-35 151.8 303 54.1
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.1e-34 151.4 304 48.4
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.4e-34 151.0 305 52.8
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 1.8e-34 150.6 284 56.7
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.8e-34 150.6 309 53.7
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 3.1e-34 149.8 299 54.2
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 4.1e-34 149.4 299 56.9
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 4.1e-34 149.4 299 53.2
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 9.1e-34 148.3 302 53.0
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 1.2e-33 147.9 302 53.0
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 2.0e-33 147.1 299 42.1
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 7.7e-33 145.2 307 52.8
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 7.7e-33 145.2 303 53.1
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 7.7e-33 145.2 308 54.5
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 2.2e-32 143.7 308 43.5
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 2.2e-32 143.7 306 52.9
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 6.5e-32 142.1 296 42.2
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 1.1e-31 141.4 307 52.1
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 1.1e-31 141.4 297 54.2
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.1e-31 141.4 323 39.6
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 3.2e-31 139.8 281 56.6
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 7.2e-31 138.7 281 51.2
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.2e-30 137.9 293 31.7
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.2e-30 137.9 286 55.6
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 3.6e-30 136.3 300 44.7
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 3.6e-30 136.3 306 43.8
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 5.1e-29 132.5 284 50.4
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 6.7e-29 132.1 283 38.2
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 1.5e-28 131.0 309 41.4
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.0e-28 130.6 213 49.8
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 3.3e-28 129.8 308 41.2
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 4.4e-28 129.4 299 51.5
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 4.4e-28 129.4 325 47.7
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 3.7e-27 126.3 390 43.8
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 8.2e-27 125.2 302 35.1
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 4.1e-26 122.9 293 38.9
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 5.9e-25 119.0 307 41.4
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 7.7e-25 118.6 292 42.1
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 2.2e-24 117.1 278 52.5
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 2.3e-21 107.1 195 32.8
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 5.2e-21 105.9 194 50.0
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.7e-19 100.9 295 39.3
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 8.2e-19 98.6 113 46.9
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 8.2e-19 98.6 57 68.4
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 5.3e-18 95.9 295 37.6
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 9.1e-18 95.1 146 39.7
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 1.6e-17 94.4 290 49.3
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.0e-17 94.0 287 27.9
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 2.0e-17 94.0 317 46.7
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 3.5e-17 93.2 133 43.6
PRCOL_00001375 Prasinoderma coloniale HOM05D004768 ORTHO05D005812 7.7e-17 92.0 309 37.9
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.3e-16 91.3 116 44.8
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.3e-16 91.3 111 45.0
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 1.9e-15 87.4 257 52.1
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 4.2e-15 86.3 125 42.4
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-14 84.0 62 62.9
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 6.1e-14 82.4 45 77.8
Glyma.10G117950 Glycine max HOM05D004768 ORTHO05D005812 6.1e-14 82.4 50 70.0
Cfa022323 Carpinus fangiana HOM05D002568 ORTHO05D125017 3.0e-13 80.1 145 35.2
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.5e-12 77.8 54 61.1
AUR62015164 Chenopodium quinoa HOM05D004768 ORTHO05D005812 2.2e-11 73.9 42 73.8
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 2.8e-11 73.6 93 40.9
C03p32520 Brassica napus HOM05D000416 ORTHO05D000322 3.7e-11 73.2 216 41.7
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 3.7e-11 73.2 114 39.5
Cre17.g723450 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 2.4e-10 70.5 114 34.2
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-10 68.9 59 59.3
Lsat_1_v5_gn_5_61500 Lactuca sativa HOM05D000964 ORTHO05D003870 2.7e-09 67.0 34 82.4
SHI23981 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-09 67.0 39 69.2
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 5.9e-09 65.9 128 33.6
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 7.7e-09 65.5 149 32.9
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 2.2e-08 63.9 35 71.4
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 2.2e-08 63.9 309 27.2
Cre05.g236250 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D141580 1.5e-07 61.2 132 32.6
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 1.9e-07 60.8 134 29.9
PSO541G4236 Papaver somniferum HOM05D002634 ORTHO05D003100 2.5e-07 60.5 112 33.9
RcHm_v2.0_Chr5g0008731 Rosa chinensis HOM05D000836 ORTHO05D000709 3.2e-07 60.1 131 30.5
Nitab4.5_0007329g0020 Nicotiana tabacum HOM05D000836 ORTHO05D000709 4.2e-07 59.7 116 32.8
Nitab4.5_0013984g0020 Nicotiana tabacum HOM05D000836 ORTHO05D000709 4.2e-07 59.7 116 32.8
TPR.G16509 Trifolium pratense HOM05D001843 ORTHO05D008358 5.5e-07 59.3 129 27.9
FAN21G2139 Fragaria x ananassa HOM05D000836 ORTHO05D000709 7.2e-07 58.9 131 27.5
Nitab4.5_0007329g0040 Nicotiana tabacum HOM05D000836 ORTHO05D000709 7.2e-07 58.9 116 32.8
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 7.2e-07 58.9 133 30.8
PGSC0003DMG400015323 Solanum tuberosum HOM05D000836 ORTHO05D000709 9.4e-07 58.5 136 27.2
Nitab4.5_0005745g0040 Nicotiana tabacum HOM05D000836 ORTHO05D000709 1.2e-06 58.2 116 33.6
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 1.2e-06 58.2 116 31.0
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.6e-06 57.8 58 50.0
Cfa026486 Carpinus fangiana HOM05D002410 ORTHO05D002805 2.1e-06 57.4 112 33.0
Eucgr.H00067 Eucalyptus grandis HOM05D000836 ORTHO05D000709 2.1e-06 57.4 117 29.9
FvH4_3g08980 Fragaria vesca HOM05D000836 ORTHO05D000709 2.1e-06 57.4 131 27.5
FAN11G4004 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.7e-06 57.0 131 26.7
vmacro15917 Vaccinium macrocarpon HOM05D000836 ORTHO05D000709 3.6e-06 56.6 132 28.0
FAN16G1410 Fragaria x ananassa HOM05D000836 ORTHO05D000709 4.7e-06 56.2 131 27.5
HanXRQChr14g0449681 Helianthus annuus HOM05D002634 ORTHO05D003100 4.7e-06 56.2 142 30.3
CARHR126590 Cardamine hirsuta HOM05D000836 ORTHO05D000709 8.0e-06 55.5 119 26.9


User provided reference genes

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