Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.5e-147 526.2 265 100.0
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 6.5e-143 510.8 265 96.2
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 2.7e-133 478.8 265 91.7
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 1.4e-126 456.4 264 85.6
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.7e-125 452.2 253 88.5
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 5.1e-124 448.0 264 83.7
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 1.3e-122 443.4 253 87.4
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 1.7e-122 443.0 261 82.4
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 2.8e-122 442.2 253 87.0
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 2.8e-122 442.2 253 87.0
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 6.3e-122 441.0 253 87.0
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 5.9e-120 434.5 256 84.8
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 2.1e-109 399.4 259 75.7
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 2.3e-100 369.4 245 71.8
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 3.1e-97 359.0 242 73.6
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 2.0e-96 356.3 249 67.9
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 4.5e-96 355.1 244 68.9
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 4.5e-96 355.1 245 69.8
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 3.8e-95 352.1 239 71.5
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 8.6e-95 350.9 237 70.0
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 1.1e-94 350.5 251 72.1
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.2e-93 347.1 251 67.3
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 2.1e-93 346.3 246 72.0
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 8.0e-93 344.4 252 67.1
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 1.0e-92 344.0 242 66.1
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 3.0e-92 342.4 257 68.1
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 5.2e-92 341.7 241 66.8
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.2e-91 340.5 248 67.3
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 2.6e-91 339.3 237 67.1
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 4.4e-91 338.6 239 66.9
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 7.5e-91 337.8 235 68.5
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 1.7e-90 336.7 242 67.4
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.2e-90 336.3 237 70.0
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.2e-90 336.3 237 70.0
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 3.7e-90 335.5 232 68.5
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 6.3e-90 334.7 250 63.6
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 6.3e-90 334.7 245 65.3
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.1e-89 334.0 251 64.5
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 3.1e-89 332.4 232 70.7
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 4.1e-89 332.0 254 63.4
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 4.1e-89 332.0 237 65.4
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 9.2e-89 330.9 239 66.1
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 9.2e-89 330.9 245 62.4
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 9.2e-89 330.9 232 70.3
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 1.2e-88 330.5 252 66.3
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 1.2e-88 330.5 236 69.1
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 2.0e-88 329.7 245 64.5
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.7e-88 329.3 241 65.6
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 2.7e-88 329.3 252 65.9
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 2.7e-88 329.3 245 65.3
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 2.7e-88 329.3 249 61.8
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 3.5e-88 328.9 252 65.9
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 4.5e-88 328.6 238 64.7
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 5.9e-88 328.2 241 65.1
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 7.8e-88 327.8 256 62.5
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.3e-87 327.0 238 66.8
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 1.3e-87 327.0 229 66.8
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 2.3e-87 326.2 240 64.2
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 3.9e-87 325.5 251 61.8
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 5.0e-87 325.1 251 61.8
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 5.0e-87 325.1 232 69.4
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 5.0e-87 325.1 242 63.2
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 6.6e-87 324.7 236 65.7
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 6.6e-87 324.7 234 65.0
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 8.6e-87 324.3 235 66.4
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 8.6e-87 324.3 237 65.4
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 1.9e-86 323.2 242 62.4
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 2.5e-86 322.8 234 65.0
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 4.3e-86 322.0 238 66.0
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 4.3e-86 322.0 237 65.8
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 4.3e-86 322.0 226 69.0
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 5.6e-86 321.6 252 63.9
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 9.5e-86 320.9 244 65.2
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 1.6e-85 320.1 263 60.1
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 4.7e-85 318.5 227 66.5
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 8.0e-85 317.8 247 63.2
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 8.0e-85 317.8 246 63.4
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 1.8e-84 316.6 238 64.7
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 1.8e-84 316.6 244 62.7
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 2.3e-84 316.2 238 64.7
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 2.3e-84 316.2 238 63.9
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.1e-84 315.8 245 62.4
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 1.2e-83 313.9 249 61.8
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 3.4e-83 312.4 235 66.4
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.3e-82 310.5 264 58.7
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.2e-82 309.7 228 67.1
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 4.9e-82 308.5 238 62.6
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 1.1e-81 307.4 227 63.9
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 2.4e-81 306.2 239 60.3
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 2.4e-81 306.2 230 61.7
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 3.2e-81 305.8 247 61.9
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 1.2e-80 303.9 236 61.4
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 4.6e-80 302.0 232 65.5
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.3e-79 300.4 252 58.3
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.9e-78 296.6 238 60.9
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 4.7e-77 292.0 232 60.8
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 1.2e-75 287.3 235 57.9
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 3.7e-74 282.3 256 57.4
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.2e-73 279.3 215 62.8
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 2.7e-72 276.2 263 54.0
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 4.3e-70 268.9 270 50.7
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 4.1e-65 252.3 248 52.4
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 4.1e-65 252.3 267 47.9
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 3.5e-64 249.2 233 54.5
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 3.9e-63 245.7 244 49.6
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.4e-60 237.3 167 68.3
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 6.8e-60 235.0 164 67.1
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 1.9e-57 226.9 176 61.9
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 4.2e-57 225.7 227 48.5
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 7.1e-57 224.9 184 62.5
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 6.0e-56 221.9 160 66.9
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 2.1e-53 213.4 162 62.3
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.0e-51 206.8 138 68.8
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 1.1e-49 201.1 233 46.4
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.5e-46 189.9 133 68.4
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 7.3e-46 188.3 217 43.3
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 3.1e-44 183.0 181 52.5
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 7.1e-41 171.8 143 59.4
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 6.0e-40 168.7 107 71.0
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 1.3e-37 161.0 151 57.0
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.7e-37 159.5 134 61.2
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.2e-35 154.5 134 59.0
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 2.3e-31 140.2 97 64.9
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 1.1e-30 137.9 98 72.4
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 1.1e-30 137.9 98 72.4
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 4.0e-28 129.4 137 46.0
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 4.5e-27 125.9 84 69.0
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 5.5e-25 119.0 117 52.1
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 1.6e-24 117.5 91 63.7
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 1.0e-23 114.8 106 52.8
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.0e-23 113.2 90 58.9
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 7.4e-22 108.6 79 60.8
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 6.9e-20 102.1 245 31.0
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 1.0e-18 98.2 90 52.2
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 4.3e-14 82.8 228 31.1
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 1.6e-08 64.3 65 50.8
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.0e-07 61.6 65 49.2
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.0e-07 61.6 65 49.2


User provided reference genes

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