Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.5e-145 519.6 283 100.0
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.2e-124 448.7 283 89.4
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 3.1e-111 405.6 283 81.3
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.0e-110 402.9 283 79.9
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 6.1e-107 391.3 286 76.9
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 4.1e-103 378.6 282 75.9
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 6.1e-99 364.8 285 74.0
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 8.8e-98 360.9 290 72.4
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.4e-97 359.0 288 74.0
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 3.7e-96 355.5 284 72.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 3.7e-96 355.5 284 72.9
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.0e-94 349.7 287 73.2
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 5.9e-94 348.2 282 72.7
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 7.2e-92 341.3 215 90.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 4.0e-90 335.5 278 71.9
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 7.0e-87 324.7 284 68.7
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 7.3e-84 314.7 276 67.4
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 6.2e-75 285.0 287 60.6
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 4.3e-60 235.7 185 75.1
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 7.3e-60 235.0 202 69.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 6.0e-30 135.6 294 38.4
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 8.7e-29 131.7 302 37.1
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.1e-27 127.1 301 35.2
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.1e-26 124.8 304 33.6
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.0e-26 122.9 298 33.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 5.3e-26 122.5 303 34.7
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.0e-26 121.7 311 33.1
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.5e-25 120.9 296 35.1
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.5e-25 119.4 301 34.2
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 4.5e-25 119.4 302 34.4
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 5.8e-25 119.0 304 34.5
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 5.8e-25 119.0 304 34.2
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.0e-24 118.2 299 32.8
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.3e-24 117.9 297 35.7
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.7e-24 117.5 293 35.2
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.7e-24 117.5 296 33.8
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 2.9e-24 116.7 309 31.1
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.5e-24 115.5 288 33.0
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 8.4e-24 115.2 304 33.2
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.1e-23 114.8 283 32.5
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.5e-23 113.6 300 33.3
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.5e-23 113.6 300 32.7
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 3.2e-23 113.2 287 33.1
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 7.1e-23 112.1 306 33.0
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 7.1e-23 112.1 302 32.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.1e-23 112.1 287 34.5
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.6e-22 110.9 304 31.6
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.1e-22 110.5 289 34.6
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 2.7e-22 110.2 291 32.3
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.5e-22 109.8 284 32.7
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 1.0e-21 108.2 304 32.2
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.0e-21 108.2 289 32.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.3e-21 107.8 281 32.7
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.8e-21 107.5 286 31.1
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.3e-21 107.1 286 30.8
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.5e-20 103.6 286 30.1
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 4.3e-20 102.8 290 30.7
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.7e-20 102.4 281 32.7
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 7.4e-20 102.1 293 33.8
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.2e-19 100.5 312 32.1
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 3.7e-19 99.8 301 32.9
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.4e-18 97.8 286 31.1
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-18 97.8 291 30.2
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.4e-18 97.8 299 30.1
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.4e-18 97.1 294 30.3
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 5.3e-18 95.9 324 30.6
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 6.9e-18 95.5 292 31.5
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 9.0e-18 95.1 281 31.0
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 9.0e-18 95.1 283 30.7
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.2e-17 94.7 304 31.9
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.5e-17 94.4 272 33.8
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 2.6e-17 93.6 292 31.2
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.6e-17 93.6 283 32.9
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 3.4e-17 93.2 290 30.7
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.4e-17 93.2 288 30.6
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 4.5e-17 92.8 292 30.1
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 5.9e-17 92.4 292 27.7
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 5.9e-17 92.4 289 29.8
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 5.9e-17 92.4 290 29.0
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.3e-16 91.3 279 30.1
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.3e-16 91.3 279 30.1
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.7e-16 90.9 293 29.7
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.9e-16 90.1 159 39.6
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 3.8e-16 89.7 285 30.5
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 6.5e-16 89.0 283 32.2
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.5e-16 89.0 277 31.0
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.2e-15 86.7 276 33.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 7.2e-15 85.5 281 28.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 7.2e-15 85.5 300 31.3
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 9.4e-15 85.1 284 29.9
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.2e-14 84.7 287 30.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.7e-14 83.6 279 28.3
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 4.6e-14 82.8 284 29.9
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 7.9e-14 82.0 351 28.2
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.0e-13 81.6 291 30.6
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.0e-13 81.6 291 30.6
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.4e-13 81.3 281 30.2
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.4e-13 81.3 349 28.4
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.8e-13 80.9 276 29.7
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 3.0e-13 80.1 284 28.5
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 6.7e-13 79.0 283 29.3
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 8.8e-13 78.6 314 27.4
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 8.8e-13 78.6 289 30.8
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-12 77.8 277 28.5
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.5e-12 77.8 304 31.2
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.5e-12 77.0 277 28.2
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 3.3e-12 76.6 293 29.0
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 4.3e-12 76.3 286 29.0
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 5.7e-12 75.9 277 28.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 7.4e-12 75.5 286 25.9
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 9.7e-12 75.1 277 27.8
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.7e-11 74.3 277 28.9
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.2e-11 73.9 291 27.8
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.8e-11 73.6 287 30.0
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.8e-11 73.6 298 28.2
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.1e-10 71.6 311 26.0
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.1e-10 71.6 128 35.2
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 1.1e-10 71.6 289 29.1
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.8e-10 70.9 290 28.6
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.4e-10 70.5 290 28.3
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 3.1e-10 70.1 162 35.8
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.1e-10 69.7 304 27.6
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 4.1e-10 69.7 271 28.8
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 5.3e-10 69.3 303 29.4
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 9.1e-10 68.6 274 29.6
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.5e-09 67.8 275 26.9
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.0e-09 67.4 287 25.4
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 2.0e-09 67.4 303 25.7
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 2.6e-09 67.0 141 34.8
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 2.6e-09 67.0 290 27.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.0e-08 65.1 297 25.3
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.3e-08 64.7 277 27.4
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.7e-08 64.3 279 28.0
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.7e-08 64.3 188 31.9
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.2e-08 63.9 269 26.4
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.2e-08 63.9 317 29.3
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.9e-08 63.5 253 28.1
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.9e-08 63.5 292 28.4
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 5.0e-08 62.8 301 27.6
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 6.5e-08 62.4 289 27.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.1e-07 61.6 126 32.5
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.1e-07 61.6 219 29.7
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.4e-07 61.2 307 25.7
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 3.2e-07 60.1 275 25.1
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 9.4e-07 58.5 280 26.4
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 1.2e-06 58.2 122 37.7
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.6e-06 57.8 277 27.1
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 2.1e-06 57.4 296 26.4
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 2.7e-06 57.0 281 26.0
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.7e-06 56.2 128 33.6
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 6.1e-06 55.8 262 30.2
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.9e-06 55.5 274 24.1


User provided reference genes

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