Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 2.7e-86 322.4 220 100.0
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 1.1e-84 317.0 220 97.7
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 3.3e-84 315.5 220 97.3
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 3.8e-80 302.0 218 92.7
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 1.7e-72 276.6 220 86.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 2.9e-72 275.8 218 86.7
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 1.9e-71 273.1 221 81.9
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 9.3e-71 270.8 218 89.0
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 6.1e-70 268.1 218 88.1
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.9e-68 263.1 218 85.8
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 1.1e-66 257.3 215 86.0
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 1.1e-63 247.3 164 87.8
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 2.5e-63 246.1 167 85.6
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 6.3e-51 204.9 226 71.2
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 2.6e-49 199.5 224 68.8
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 6.5e-48 194.9 223 65.0
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 1.9e-47 193.4 221 65.6
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 3.6e-46 189.1 226 67.7
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 4.7e-46 188.7 226 67.3
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 4.7e-46 188.7 220 61.8
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 8.0e-46 188.0 227 68.7
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.0e-45 187.6 225 67.1
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.0e-45 187.6 225 67.1
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 5.2e-45 185.3 225 69.8
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 5.2e-45 185.3 221 66.5
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 8.8e-45 184.5 226 67.3
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.2e-44 184.1 218 70.6
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 3.3e-44 182.6 225 60.4
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 4.4e-44 182.2 225 60.9
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 5.7e-44 181.8 222 65.3
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 7.5e-44 181.4 225 64.0
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 7.5e-44 181.4 220 59.1
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 9.7e-44 181.0 221 68.3
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 2.2e-43 179.9 216 63.9
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 2.8e-43 179.5 218 61.0
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 6.3e-43 178.3 221 62.4
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 6.3e-43 178.3 220 66.8
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 8.2e-43 177.9 220 64.5
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 8.2e-43 177.9 225 64.4
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 1.8e-42 176.8 225 63.6
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 4.1e-42 175.6 225 59.6
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 7.0e-42 174.9 220 60.9
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 7.0e-42 174.9 226 64.6
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 9.1e-42 174.5 157 80.3
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 1.2e-41 174.1 222 61.7
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 3.5e-41 172.6 219 66.2
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 3.5e-41 172.6 218 67.4
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 4.5e-41 172.2 219 64.4
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 7.7e-41 171.4 159 76.1
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 7.7e-41 171.4 222 66.2
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.7e-40 170.2 174 70.7
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.7e-40 170.2 220 60.9
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.7e-40 170.2 221 64.7
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.7e-40 170.2 220 60.9
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 6.5e-40 168.3 228 61.0
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 6.5e-40 168.3 220 61.8
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 6.5e-40 168.3 223 62.3
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 6.5e-40 168.3 220 59.5
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 8.5e-40 167.9 218 66.5
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.1e-39 167.5 217 61.3
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 1.9e-39 166.8 218 65.1
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.5e-39 166.4 217 66.4
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 9.4e-39 164.5 217 57.1
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.2e-38 164.1 222 61.7
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 1.6e-38 163.7 204 68.1
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 1.6e-38 163.7 216 65.3
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 4.7e-38 162.2 216 61.6
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 4.7e-38 162.2 218 60.6
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 6.1e-38 161.8 217 61.3
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 1.0e-37 161.0 225 61.3
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.0e-37 161.0 216 56.9
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 3.4e-36 156.0 227 56.4
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 5.7e-36 155.2 222 61.3
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 5.7e-36 155.2 216 61.6
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 9.8e-36 154.5 229 60.3
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.7e-35 153.7 143 60.8
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 1.7e-35 153.7 168 67.9
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 1.7e-35 153.7 221 57.9
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 2.2e-35 153.3 216 63.9
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 8.3e-35 151.4 218 61.5
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 2.4e-34 149.8 224 48.7
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 2.7e-33 146.4 222 56.3
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.9e-32 142.9 163 70.6
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 1.5e-31 140.6 183 59.0
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 1.4e-29 134.0 127 70.9
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.6e-28 129.8 167 64.1
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.4e-28 129.4 126 80.2
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 4.9e-27 125.6 149 67.1
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.4e-26 124.0 219 54.3
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 9.2e-26 121.3 162 65.4
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 2.9e-24 116.3 167 62.3
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 3.3e-23 112.8 150 66.0
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 5.6e-23 112.1 105 85.7
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 5.6e-23 112.1 105 77.1
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.0e-21 107.8 76 73.7
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 2.6e-20 103.2 105 78.1
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 5.7e-20 102.1 88 60.2
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 7.5e-20 101.7 161 49.1
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.7e-19 100.5 115 53.0
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 8.3e-19 98.2 105 81.9
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 3.0e-16 89.7 167 53.9
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 3.0e-16 89.7 108 48.1
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.1e-15 87.8 130 43.1
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 5.6e-15 85.5 193 48.7
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 7.3e-15 85.1 101 50.5
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.3e-13 80.1 182 29.1
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 3.1e-13 79.7 60 65.0
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 1.5e-12 77.4 91 41.8
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 2.0e-12 77.0 160 38.1
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 1.9e-10 70.5 108 42.6
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 5.0e-08 62.4 82 47.6
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 4.3e-07 59.3 106 46.2


User provided reference genes

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