Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31740 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 2.3e-88 328.9 172 100.0
AL7G20270 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 1.2e-73 280.0 193 79.8
CARHR108470 Cardamine hirsuta HOM05D003695 ORTHO05D004788 1.4e-66 256.5 194 72.7
Carub.0003s3212 Capsella rubella HOM05D003695 ORTHO05D004788 3.2e-66 255.4 195 72.8
BcaB08g34780 Brassica carinata HOM05D003695 ORTHO05D004788 4.1e-66 255.0 194 72.2
AL3G51020 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 5.4e-66 254.6 195 72.3
AL6G43520 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 5.4e-66 254.6 195 72.3
Sp3g31410 Schrenkiella parvula HOM05D003695 ORTHO05D004788 1.2e-65 253.4 194 72.2
A06p33480 Brassica napus HOM05D003695 ORTHO05D004788 2.1e-65 252.7 194 71.6
CARHR239640 Cardamine hirsuta HOM05D003695 ORTHO05D004788 2.1e-65 252.7 196 72.4
AT2G17980 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 4.6e-65 251.5 195 71.8
C03p58880 Brassica napus HOM05D003695 ORTHO05D004788 4.6e-65 251.5 194 71.1
Thhalv10022599m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 4.6e-65 251.5 196 71.4
Aa31LG8G15160 Aethionema arabicum HOM05D003695 ORTHO05D004788 7.8e-65 250.8 194 70.6
THA.LOC104819511 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 1.5e-63 246.5 194 68.0
Thhalv10003843m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 8.1e-62 240.7 196 69.4
THA.LOC104807186 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 8.1e-62 240.7 193 68.9
MD05G1133700 Malus domestica HOM05D003695 ORTHO05D004788 1.4e-61 240.0 194 67.5
VMungo0251G1743 Vigna mungo HOM05D003695 ORTHO05D004788 3.1e-61 238.8 194 68.0
PGR142G4002 Punica granatum HOM05D003695 ORTHO05D004788 5.2e-61 238.0 193 67.9
Eucgr.G01854 Eucalyptus grandis HOM05D003695 ORTHO05D004788 6.9e-61 237.7 194 67.5
Sabra04G0138000 Salix brachista HOM05D003695 ORTHO05D004788 9.0e-61 237.3 194 67.0
Glyma.05G122800 Glycine max HOM05D003695 ORTHO05D004788 1.2e-60 236.9 194 67.5
MD10G1138700 Malus domestica HOM05D003695 ORTHO05D004788 1.2e-60 236.9 194 66.5
Atru.chr9.527 Acer truncatum HOM05D003695 ORTHO05D004788 2.6e-60 235.7 194 67.0
Prupe.8G177500 Prunus persica HOM05D003695 ORTHO05D004788 2.6e-60 235.7 194 66.0
arahy.Tifrunner.gnm1.ann1.50NG3N Arachis hypogaea HOM05D003695 ORTHO05D004788 3.4e-60 235.3 194 67.0
arahy.Tifrunner.gnm1.ann1.I3VYS4 Arachis hypogaea HOM05D003695 ORTHO05D004788 3.4e-60 235.3 194 67.0
arahy.Tifrunner.gnm1.ann1.Q95X63 Arachis hypogaea HOM05D003695 ORTHO05D004788 3.4e-60 235.3 194 67.0
FAN27G2019 Fragaria x ananassa HOM05D003695 ORTHO05D004788 3.4e-60 235.3 193 66.8
FvH4_2g16530 Fragaria vesca HOM05D003695 ORTHO05D004788 5.8e-60 234.6 193 67.4
FAN15G0675 Fragaria x ananassa HOM05D003695 ORTHO05D004788 5.8e-60 234.6 193 67.4
FAN24G2440 Fragaria x ananassa HOM05D003695 ORTHO05D004788 5.8e-60 234.6 193 67.4
Ciclev10028035m.g Citrus clementina HOM05D003695 ORTHO05D004788 7.6e-60 234.2 193 66.8
Potri.004G204400 Populus trichocarpa HOM05D003695 ORTHO05D004788 7.6e-60 234.2 194 66.0
RcHm_v2.0_Chr7g0225341 Rosa chinensis HOM05D003695 ORTHO05D004788 7.6e-60 234.2 193 66.8
Duzib052G0095 Durio zibethinus HOM05D003695 ORTHO05D004788 2.2e-59 232.6 194 65.5
Manes.02G064001 Manihot esculenta HOM05D003695 ORTHO05D004788 2.2e-59 232.6 193 65.8
Phvul.002G202700 Phaseolus vulgaris HOM05D003695 ORTHO05D004788 2.2e-59 232.6 194 66.5
Dinv41883 Davidia involucrata HOM05D003695 ORTHO05D004788 2.9e-59 232.3 194 66.5
vmacro21804 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 2.9e-59 232.3 194 64.9
GSVIVG01023951001 Vitis vinifera HOM05D003695 ORTHO05D004788 2.9e-59 232.3 170 70.0
Atru.chr9.531 Acer truncatum HOM05D003695 ORTHO05D004788 3.8e-59 231.9 194 66.5
CAN.G1235.1 Capsicum annuum HOM05D003695 ORTHO05D004788 3.8e-59 231.9 194 63.9
Duzib132G1261 Durio zibethinus HOM05D003695 ORTHO05D004788 3.8e-59 231.9 194 65.5
CANSAT25G1589 Cannabis sativa HOM05D003695 ORTHO05D004788 4.9e-59 231.5 194 64.9
COL.COLO4_17937 Corchorus olitorius HOM05D003695 ORTHO05D004788 4.9e-59 231.5 194 65.5
Ca_18316_v3 Cicer arietinum L. HOM05D003695 ORTHO05D004788 6.4e-59 231.1 194 65.5
ClCG02G010010 Citrullus lanatus HOM05D003695 ORTHO05D004788 6.4e-59 231.1 194 65.5
Hma1.2p1_0271F.1_g108980 Hydrangea macrophylla HOM05D003695 ORTHO05D004788 6.4e-59 231.1 194 65.5
Gohir.A12G033600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 8.4e-59 230.7 194 64.9
Thecc.02G045500 Theobroma cacao HOM05D003695 ORTHO05D004788 8.4e-59 230.7 193 65.8
Dinv14161 Davidia involucrata HOM05D003695 ORTHO05D004788 1.1e-58 230.3 193 66.3
Nitab4.5_0000783g0140 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.1e-58 230.3 194 64.4
TWI31G0731 Tripterygium wilfordii HOM05D003695 ORTHO05D004788 1.1e-58 230.3 194 65.5
Lalb_Chr07g0189201 Lupinus albus HOM05D003695 ORTHO05D004788 1.4e-58 229.9 194 65.5
Solyc01g112150.3 Solanum lycopersicum HOM05D003695 ORTHO05D004788 1.4e-58 229.9 194 64.4
PGSC0003DMG400014674 Solanum tuberosum HOM05D003695 ORTHO05D004788 1.4e-58 229.9 194 64.4
DCAR_006289 Daucus carota HOM05D003695 ORTHO05D004788 2.4e-58 229.2 193 65.3
Glyma.08G077800 Glycine max HOM05D003695 ORTHO05D004788 3.2e-58 228.8 194 66.0
Manes.02G063200 Manihot esculenta HOM05D003695 ORTHO05D004788 3.2e-58 228.8 193 64.8
Nitab4.5_0011212g0010 Nicotiana tabacum HOM05D003695 ORTHO05D004788 3.2e-58 228.8 194 63.9
Psat7g095320 Pisum sativum HOM05D003695 ORTHO05D004788 3.2e-58 228.8 194 65.5
Rhsim11G0196800 Rhododendron simsii HOM05D003695 ORTHO05D004788 3.2e-58 228.8 194 64.4
Lj4g0019363 Lotus japonicus HOM05D003695 ORTHO05D004788 5.4e-58 228.0 194 64.9
Sopen01g054200 Solanum pennellii HOM05D003695 ORTHO05D004788 5.4e-58 228.0 194 63.9
Gohir.D12G038900 Gossypium hirsutum HOM05D003695 ORTHO05D004788 9.3e-58 227.3 194 63.9
Gorai.008G040800 Gossypium raimondii HOM05D003695 ORTHO05D004788 9.3e-58 227.3 194 63.9
Sabra09G0129300 Salix brachista HOM05D003695 ORTHO05D004788 9.3e-58 227.3 194 63.4
MELO3C022592.2 Cucumis melo HOM05D003695 ORTHO05D004788 1.2e-57 226.9 192 64.6
CsaV3_5G012530 Cucumis sativus L. HOM05D003695 ORTHO05D004788 1.6e-57 226.5 192 64.1
Medtr4g094405 Medicago truncatula HOM05D003695 ORTHO05D004788 2.1e-57 226.1 194 63.9
TAR625G0891 Trochodendron aralioides HOM05D003695 ORTHO05D004788 3.5e-57 225.3 194 63.9
ECA232G0128 Erigeron canadensis HOM05D003695 ORTHO05D004788 4.6e-57 224.9 195 64.6
Nitab4.5_0001700g0110 Nicotiana tabacum HOM05D003695 ORTHO05D004788 4.6e-57 224.9 193 63.7
Actinidia20564 Actinidia chinensis HOM05D003695 ORTHO05D004788 6.0e-57 224.6 194 62.9
HanXRQChr14g0459051 Helianthus annuus HOM05D003695 ORTHO05D004788 6.0e-57 224.6 194 64.4
vmacro08752 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 6.0e-57 224.6 194 63.4
ClCG02G003540 Citrullus lanatus HOM05D003695 ORTHO05D004788 1.0e-56 223.8 194 62.9
DCAR_015668 Daucus carota HOM05D003695 ORTHO05D004788 1.0e-56 223.8 193 62.7
FAN08G1272 Fragaria x ananassa HOM05D003695 ORTHO05D004788 1.0e-56 223.8 193 63.7
Potri.009G165300 Populus trichocarpa HOM05D003695 ORTHO05D004788 1.0e-56 223.8 194 62.4
Peaxi162Scf00362g00220 Petunia axillaris HOM05D003695 ORTHO05D004788 1.7e-56 223.0 194 63.4
Aqoxy5G01038 Aquilegia oxysepala HOM05D003695 ORTHO05D004788 2.3e-56 222.6 193 62.2
Peaxi162Scf00205g00012 Petunia axillaris HOM05D003695 ORTHO05D004788 2.3e-56 222.6 193 62.7
Nitab4.5_0003828g0040 Nicotiana tabacum HOM05D003695 ORTHO05D004788 3.9e-56 221.9 193 62.7
CSS0016232 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 5.1e-56 221.5 183 65.6
Sed0014704 Sechium edule HOM05D003695 ORTHO05D004788 1.1e-55 220.3 193 62.2
Sed0023045 Sechium edule HOM05D003695 ORTHO05D004788 1.5e-55 219.9 194 62.4
SGA_v2.0_scaffold32G13340 Striga asiatica HOM05D003695 ORTHO05D004788 1.5e-55 219.9 193 63.2
MELO3C013262.2 Cucumis melo HOM05D003695 ORTHO05D004788 2.5e-55 219.2 194 61.3
CsaV3_7G001760 Cucumis sativus L. HOM05D003695 ORTHO05D004788 2.5e-55 219.2 194 60.8
Migut.E00721 Erythranthe guttata HOM05D003695 ORTHO05D004788 2.5e-55 219.2 193 62.2
Oeu062472.1 Olea europaea HOM05D003695 ORTHO05D004788 2.5e-55 219.2 194 61.9
Oeu062473.1 Olea europaea HOM05D003695 ORTHO05D004788 2.5e-55 219.2 194 61.9
QL11p053951 Quercus lobata HOM05D003695 ORTHO05D004788 3.3e-55 218.8 192 61.5
Sc18g0005940 Simmondsia chinensis HOM05D003695 ORTHO05D004788 3.3e-55 218.8 192 63.0
CSS0026215 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 4.3e-55 218.4 194 60.8
Lj5A173T63 Lonicera japonica HOM05D003695 ORTHO05D004788 4.3e-55 218.4 193 63.7
Nn5g30948 Nelumbo nucifera HOM05D003695 ORTHO05D004788 5.6e-55 218.0 193 62.7
Cfa005327 Carpinus fangiana HOM05D003695 ORTHO05D004788 9.6e-55 217.2 193 62.7
BcaB01g00720 Brassica carinata HOM05D003695 ORTHO05D004788 1.3e-54 216.9 201 64.7
Actinidia18006 Actinidia chinensis HOM05D003695 ORTHO05D004788 2.1e-54 216.1 194 60.8
Haze_02053 Corylus avellana HOM05D003695 ORTHO05D004788 2.1e-54 216.1 193 62.2
Oeu021964.1 Olea europaea HOM05D003695 ORTHO05D004788 2.1e-54 216.1 194 59.8
unitig_62.g23821 Utricularia gibba HOM05D003695 ORTHO05D004788 2.8e-54 215.7 193 61.1
BcaB07g29908 Brassica carinata HOM05D003695 ORTHO05D004788 6.2e-54 214.5 198 65.2
Hund28543 Selenicereus undatus HOM05D003695 ORTHO05D004788 6.2e-54 214.5 193 61.1
Hund28545 Selenicereus undatus HOM05D003695 ORTHO05D004788 6.2e-54 214.5 193 61.1
CiPaw.06G118100 Carya illinoinensis HOM05D003695 ORTHO05D004788 8.1e-54 214.2 192 62.0
SalBow1G1498 Salvia bowleyana HOM05D003695 ORTHO05D004788 8.1e-54 214.2 194 59.8
ATR0661G017 Amborella trichopoda HOM05D003695 ORTHO05D004788 1.4e-53 213.4 194 61.3
MSTRG.5469 Avicennia marina HOM05D003695 ORTHO05D004788 1.4e-53 213.4 193 60.1
Lsat_1_v5_gn_9_39861 Lactuca sativa HOM05D003695 ORTHO05D004788 1.4e-53 213.4 199 61.8
PSO170G1984 Papaver somniferum HOM05D003695 ORTHO05D004788 4.0e-53 211.8 192 60.9
QL02p073794 Quercus lobata HOM05D003695 ORTHO05D004788 4.0e-53 211.8 192 61.5
TPR.G23776 Trifolium pratense HOM05D003695 ORTHO05D004788 6.9e-53 211.1 194 62.9
Lsat_1_v5_gn_1_280 Lactuca sativa HOM05D003695 ORTHO05D004788 9.0e-53 210.7 193 62.2
CiPaw.05G088700 Carya illinoinensis HOM05D003695 ORTHO05D004788 1.2e-52 210.3 192 61.5
MBI05_g12019_MAGBIO Magnolia biondii HOM05D003695 ORTHO05D004788 1.2e-52 210.3 195 59.5
FAN04G0554 Fragaria x ananassa HOM05D003695 ORTHO05D004788 9.9e-52 207.2 180 63.3
SEGI_21511 Sequoiadendron giganteum HOM05D003695 ORTHO05D004788 2.2e-51 206.1 193 57.0
HPP92_008376 Vanilla planifolia HOM05D003695 ORTHO05D004788 7.1e-50 201.1 193 58.0
MSTRG.27620 Avicennia marina HOM05D003695 ORTHO05D004788 2.7e-49 199.1 189 59.3
BcaB03g12716 Brassica carinata HOM05D003695 ORTHO05D004788 3.9e-48 195.3 132 76.5
Zm00001eb190510 Zea mays HOM05D003695 ORTHO05D004788 1.5e-47 193.4 196 57.7
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 9.6e-47 190.7 193 56.5
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.3e-46 190.3 193 56.0
Os03g0620800 Oryza sativa ssp. japonica HOM05D003695 ORTHO05D004788 1.6e-46 189.9 193 55.4
AUR62012932 Chenopodium quinoa HOM05D003695 ORTHO05D004788 2.8e-46 189.1 193 55.4
Gohir.A01G174400 Gossypium hirsutum HOM05D003695 ORTHO05D004788 2.8e-46 189.1 171 62.6
CDE04G2739 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 3.7e-46 188.7 151 62.9
CSS0032013 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 4.8e-46 188.3 173 60.1
C03p87590 Brassica napus HOM05D003695 ORTHO05D027682 1.4e-45 186.8 132 72.7
BolC3t21077H Brassica oleracea HOM05D003695 ORTHO05D027682 1.4e-45 186.8 132 72.7
Zm00001eb027830 Zea mays HOM05D003695 ORTHO05D004788 1.4e-45 186.8 194 54.6
AUR62034267 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.8e-45 186.4 193 54.9
Ah.02g124580 Amaranthus hybridus HOM05D003695 ORTHO05D004788 2.4e-45 186.0 193 54.9
CDE07G1944 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 5.3e-45 184.9 151 61.6
FvH4_5g21350 Fragaria vesca HOM05D003695 ORTHO05D004788 9.0e-45 184.1 169 60.9
SHI55151 Sapria himalayana HOM05D003695 ORTHO05D004788 9.9e-44 180.6 200 54.5
Pp3c4_5220 Physcomitrium patens HOM05D003695 ORTHO05D004788 1.3e-43 180.3 192 51.0
Mapoly0007s0195 Marchantia polymorpha HOM05D003695 ORTHO05D004788 1.7e-43 179.9 193 52.8
BcaC01g01063 Brassica carinata HOM05D003695 ORTHO05D027682 4.2e-42 175.3 155 63.2
CSS0036850 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 2.7e-41 172.6 158 60.1
AagrBONN_evm.TU.Sc2ySwM_117.2597 Anthoceros agrestis HOM05D003695 ORTHO05D004788 4.6e-41 171.8 194 48.5
CBR_g41372 Chara braunii HOM05D003695 ORTHO05D004788 1.0e-40 170.6 147 59.2
Ah.11g043800 Amaranthus hybridus HOM05D003695 ORTHO05D004788 2.3e-40 169.5 183 52.5
Cpa.g.sc20.199 Carica papaya HOM05D003695 ORTHO05D004788 6.7e-40 167.9 148 64.9
SMO134G0246 Selaginella moellendorffii HOM05D003695 ORTHO05D004788 3.4e-36 155.6 192 46.4
Gorai.002G206000 Gossypium raimondii HOM05D003695 ORTHO05D004788 1.9e-34 149.8 140 60.7
Gohir.D01G165600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 4.8e-30 135.2 129 59.7
Pp3c12_11250 Physcomitrium patens HOM05D003695 ORTHO05D004788 2.2e-27 126.3 154 46.1
Cre12.g521350 Chlamydomonas reinhardtii HOM05D003695 ORTHO05D004788 3.2e-26 122.5 138 47.1
TPR.G31636 Trifolium pratense HOM05D003695 ORTHO05D025748 1.3e-24 117.1 128 52.3
MCO11G234 Micromonas commoda HOM05D003695 ORTHO05D004788 3.3e-23 112.5 203 38.9
PRCOL_00000573 Prasinoderma coloniale HOM05D003695 ORTHO05D004788 3.1e-21 105.9 205 31.2
RcHm_v2.0_Chr6g0280551 Rosa chinensis HOM05D003695 ORTHO05D025748 5.3e-21 105.1 77 64.9
Lsat_1_v5_gn_3_116720 Lactuca sativa HOM05D003695 ORTHO05D025748 1.9e-18 96.7 105 54.3
AT4G36100 Arabidopsis thaliana HOM05D003695 ORTHO05D000483 5.5e-10 68.6 98 48.0
BcaC03g17368 Brassica carinata HOM05D003695 ORTHO05D004788 2.3e-08 63.2 41 75.6


User provided reference genes

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