Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.2e-94 350.1 215 100.0
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 3.8e-85 318.5 212 89.6
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 3.6e-59 232.3 222 76.6
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 5.2e-58 228.4 229 69.4
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 2.8e-51 206.1 210 70.0
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 2.8e-51 206.1 210 70.0
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 5.2e-50 201.8 208 70.7
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 5.2e-50 201.8 225 68.0
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 8.9e-50 201.1 223 64.6
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 1.3e-48 197.2 233 65.2
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 1.7e-48 196.8 211 68.7
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 1.7e-48 196.8 211 68.7
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 8.3e-48 194.5 154 77.3
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 2.4e-47 193.0 229 64.2
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 5.4e-47 191.8 229 64.6
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 7.0e-47 191.4 229 64.2
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 7.0e-47 191.4 229 64.2
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 1.2e-46 190.7 229 64.2
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 8.3e-40 167.9 233 60.9
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 6.6e-37 158.3 242 56.2
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-36 157.5 247 51.0
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 2.1e-35 153.3 246 48.0
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 2.8e-35 152.9 246 48.0
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 4.7e-35 152.1 252 48.4
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 3.1e-34 149.4 245 48.6
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 8.9e-34 147.9 239 59.0
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 8.9e-34 147.9 232 58.2
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 4.4e-33 145.6 247 48.6
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 5.8e-33 145.2 189 58.7
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 1.7e-32 143.7 243 47.7
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 1.7e-32 143.7 243 47.7
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 1.7e-32 143.7 243 47.7
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 2.9e-32 142.9 245 49.4
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 2.9e-32 142.9 245 49.4
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 2.9e-32 142.9 245 49.4
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.4e-31 140.6 246 52.4
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 1.4e-31 140.6 245 49.0
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 5.4e-31 138.7 238 54.2
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 2.7e-30 136.3 244 54.5
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 3.5e-30 136.0 244 47.5
BcaNung01519 Brassica carinata HOM05D004099 ORTHO05D004777 1.7e-29 133.7 121 73.6
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 3.9e-29 132.5 177 53.1
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 6.6e-29 131.7 187 49.2
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 6.0e-22 108.6 154 55.2
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 5.1e-21 105.5 95 64.2
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 5.1e-21 105.5 95 64.2
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 5.1e-21 105.5 95 64.2
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 3.3e-20 102.8 97 62.9
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 5.6e-20 102.1 87 64.4
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 7.3e-20 101.7 163 43.6
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 1.6e-19 100.5 145 53.1
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 4.8e-19 99.0 137 45.3
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 6.2e-19 98.6 95 62.1
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 6.2e-19 98.6 140 43.6
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 8.1e-19 98.2 152 53.3
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 1.1e-18 97.8 151 45.7
BcaNung04136 Brassica carinata HOM05D004099 ORTHO05D004777 1.8e-18 97.1 110 60.9
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 2.4e-18 96.7 149 45.6
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 3.1e-18 96.3 152 53.9
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 6.9e-18 95.1 144 46.5
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 6.9e-18 95.1 144 46.5
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 9.0e-18 94.7 142 52.1
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 9.0e-18 94.7 159 42.1
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 9.0e-18 94.7 87 60.9
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 9.0e-18 94.7 87 60.9
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 1.2e-17 94.4 87 59.8
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 1.5e-17 94.0 162 42.6
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 2.0e-17 93.6 84 61.9
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 2.0e-17 93.6 87 58.6
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 2.6e-17 93.2 144 47.9
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 2.6e-17 93.2 151 43.0
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 2.6e-17 93.2 144 47.9
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 3.4e-17 92.8 87 60.9
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 4.5e-17 92.4 84 65.5
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 4.5e-17 92.4 94 56.4
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.8e-17 92.0 84 60.7
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 5.8e-17 92.0 84 60.7
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 5.8e-17 92.0 85 60.0
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 5.8e-17 92.0 85 60.0
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 5.8e-17 92.0 92 57.6
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 5.8e-17 92.0 131 44.3
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 7.6e-17 91.7 149 42.3
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 7.6e-17 91.7 145 44.1
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 7.6e-17 91.7 95 54.7
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 9.9e-17 91.3 142 51.4
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 9.9e-17 91.3 145 49.0
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 1.3e-16 90.9 90 58.9
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 1.3e-16 90.9 90 58.9
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 1.3e-16 90.9 101 57.4
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.3e-16 90.9 150 43.3
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 1.7e-16 90.5 81 61.7
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 1.7e-16 90.5 92 57.6
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 2.9e-16 89.7 81 60.5
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 2.9e-16 89.7 170 44.1
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 3.8e-16 89.4 83 59.0
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 3.8e-16 89.4 77 62.3
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 3.8e-16 89.4 177 41.2
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 3.8e-16 89.4 177 41.2
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 3.8e-16 89.4 81 60.5
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 4.9e-16 89.0 161 45.3
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 4.9e-16 89.0 152 39.5
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 4.9e-16 89.0 84 58.3
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 6.4e-16 88.6 87 58.6
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 6.4e-16 88.6 140 42.1
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 8.4e-16 88.2 145 43.4
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 8.4e-16 88.2 145 43.4
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 8.4e-16 88.2 81 60.5
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-15 87.8 86 57.0
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 1.1e-15 87.8 85 56.5
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 1.1e-15 87.8 173 41.0
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 1.4e-15 87.4 96 57.3
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 1.4e-15 87.4 84 57.1
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 1.9e-15 87.0 86 54.7
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 2.4e-15 86.7 88 58.0
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 2.4e-15 86.7 88 58.0
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 2.4e-15 86.7 82 58.5
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 3.2e-15 86.3 81 59.3
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 4.2e-15 85.9 142 41.5
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 4.2e-15 85.9 83 56.6
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 7.1e-15 85.1 137 48.2
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 7.1e-15 85.1 82 58.5
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 1.6e-14 84.0 142 40.8
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 1.6e-14 84.0 87 55.2
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 1.6e-14 84.0 84 56.0
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 1.6e-14 84.0 85 61.2
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 2.1e-14 83.6 145 49.0
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 2.7e-14 83.2 84 58.3
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 4.6e-14 82.4 94 51.1
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 6.0e-14 82.0 140 41.4
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 6.0e-14 82.0 140 41.4
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 6.0e-14 82.0 140 41.4
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 6.0e-14 82.0 88 54.5
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 7.9e-14 81.6 93 54.8
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 7.9e-14 81.6 81 56.8
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 1.0e-13 81.3 81 58.0
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 1.0e-13 81.3 86 50.0
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 1.0e-13 81.3 91 48.4
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.3e-13 80.9 88 51.1
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 1.5e-12 77.4 84 56.0
TWI63G1022 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 1.5e-12 77.4 88 53.4
Ciclev10009036m.g Citrus clementina HOM05D004099 ORTHO05D004777 7.4e-12 75.1 89 57.3
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 2.8e-11 73.2 99 47.5
Potri.006G273100 Populus trichocarpa HOM05D004099 ORTHO05D004777 2.8e-11 73.2 153 41.8
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 3.6e-11 72.8 146 47.9
Ah.12g061250 Amaranthus hybridus HOM05D004099 ORTHO05D004777 4.8e-11 72.4 98 43.9
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 6.2e-11 72.0 53 66.0
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 5.3e-10 68.9 83 51.8
Os09g0499000 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 9.0e-10 68.2 88 50.0
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.2e-09 67.8 66 60.6
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 2.0e-09 67.0 85 47.1
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 2.0e-09 67.0 90 48.9
Aqoxy7G02919 Aquilegia oxysepala HOM05D002359 ORTHO05D002394 3.4e-09 66.2 72 52.8
CDE07G1514 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 7.6e-09 65.1 103 39.8
MBI16_g09343_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 7.6e-09 65.1 135 43.0
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 9.9e-09 64.7 90 47.8
HPP92_015829 Vanilla planifolia HOM05D002359 ORTHO05D002394 1.7e-08 63.9 78 50.0
Zm00001eb174750 Zea mays HOM05D002359 ORTHO05D002394 2.9e-08 63.2 88 47.7
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 3.8e-08 62.8 67 55.2
Os06g0698748 Oryza sativa ssp. japonica HOM05D004099 ORTHO05D004777 6.4e-08 62.0 65 52.3
CDE06G0466 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 8.4e-08 61.6 106 36.8
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 8.4e-08 61.6 85 45.9
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 1.1e-07 61.2 73 49.3
SGA_v2.0_scaffold193G40664 Striga asiatica HOM05D004099 ORTHO05D004777 1.1e-07 61.2 100 41.0
Os08g0516900 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 1.4e-07 60.8 54 61.1
ATR0580G260 Amborella trichopoda HOM05D002359 ORTHO05D002394 1.9e-07 60.5 56 58.9
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 1.9e-07 60.5 73 49.3
AL5G21890 Arabidopsis lyrata HOM05D002359 ORTHO05D002394 2.4e-07 60.1 63 49.2
Oeu018566.1 Olea europaea HOM05D004099 ORTHO05D004777 2.4e-07 60.1 71 56.3
CDE06G0156 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 1.2e-06 57.8 70 48.6
Nitab4.5_0000502g0140 Nicotiana tabacum HOM05D004099 ORTHO05D004777 1.2e-06 57.8 60 53.3
ATR0598G330 Amborella trichopoda HOM05D002359 ORTHO05D002394 1.6e-06 57.4 146 30.8
CDE04G2528 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 1.6e-06 57.4 62 48.4
MSTRG.11808 Avicennia marina HOM05D004099 ORTHO05D004777 2.1e-06 57.0 56 55.4
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 2.1e-06 57.0 77 44.2
Zm00001eb273070 Zea mays HOM05D004099 ORTHO05D002394 2.1e-06 57.0 53 52.8
Zm00001eb317350 Zea mays HOM05D002359 ORTHO05D002394 2.1e-06 57.0 96 43.8
Zm00001eb035860 Zea mays HOM05D002359 ORTHO05D002394 3.5e-06 56.2 80 47.5
ClCG08G009780 Citrullus lanatus HOM05D002359 ORTHO05D002394 6.0e-06 55.5 94 41.5
MELO3C011491.2 Cucumis melo HOM05D002359 ORTHO05D002394 6.0e-06 55.5 99 41.4
CsaV3_6G031910 Cucumis sativus L. HOM05D002359 ORTHO05D002394 7.9e-06 55.1 94 41.5


User provided reference genes

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