Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 5.8e-102 374.4 213 100.0
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.1e-95 353.6 213 84.0
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 2.9e-93 345.5 214 91.1
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 3.9e-90 335.1 214 85.0
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 8.7e-90 334.0 213 85.0
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 8.7e-90 334.0 213 85.0
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 1.5e-89 333.2 213 85.0
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 1.5e-89 333.2 213 85.0
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 1.9e-89 332.8 216 83.8
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 2.5e-89 332.4 213 86.4
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 5.6e-89 331.3 216 83.3
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 9.6e-89 330.5 214 80.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 1.3e-88 330.1 216 84.7
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 8.1e-88 327.4 168 94.6
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-87 327.0 216 84.7
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.1e-87 327.0 216 84.7
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.1e-87 327.0 216 84.7
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 1.8e-87 326.2 168 94.0
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 2.6e-86 322.4 213 76.5
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.9e-81 306.2 174 83.3
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 9.0e-79 297.4 174 81.0
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 2.6e-78 295.8 174 80.5
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 5.8e-78 294.7 174 81.0
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 7.6e-78 294.3 174 79.3
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.9e-76 289.7 175 80.0
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.9e-76 289.7 175 80.0
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.5e-76 289.3 174 78.2
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 3.5e-75 285.4 174 76.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 3.5e-75 285.4 174 78.2
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.5e-75 285.4 174 77.0
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 4.6e-75 285.0 175 78.9
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 4.6e-75 285.0 174 75.3
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.1e-75 284.6 175 77.7
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 6.1e-75 284.6 174 76.4
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 6.1e-75 284.6 174 76.4
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 7.9e-75 284.3 173 77.5
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.0e-74 283.9 174 78.2
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.0e-74 283.9 174 76.4
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.3e-74 282.7 174 77.0
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 3.9e-74 282.0 174 75.3
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.9e-74 282.0 174 76.4
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 6.7e-74 281.2 175 76.6
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.5e-73 280.0 174 75.3
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.9e-73 279.6 174 74.7
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.5e-73 279.3 175 75.4
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.5e-73 279.3 174 77.6
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 3.3e-73 278.9 175 74.3
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 4.3e-73 278.5 174 75.9
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 5.7e-73 278.1 175 74.3
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 5.7e-73 278.1 175 75.4
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 7.4e-73 277.7 174 74.7
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 2.2e-72 276.2 174 73.6
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.8e-72 275.8 174 74.1
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.4e-71 273.5 175 75.4
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.8e-71 273.1 174 73.0
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.8e-71 273.1 175 74.9
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 2.4e-71 272.7 177 72.3
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 3.1e-71 272.3 174 72.4
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 4.1e-71 271.9 174 75.3
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 4.1e-71 271.9 174 75.9
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 5.3e-71 271.6 174 72.4
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 9.0e-71 270.8 174 72.4
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 9.0e-71 270.8 175 74.3
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 9.0e-71 270.8 174 74.7
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 9.0e-71 270.8 174 71.8
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.2e-70 270.4 175 73.7
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.2e-70 270.4 174 71.8
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 4.5e-70 268.5 174 71.3
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.0e-69 267.3 175 72.6
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.3e-69 266.9 174 72.4
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.7e-69 266.5 174 71.8
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 2.2e-69 266.2 174 70.1
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.9e-69 265.8 174 73.0
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 2.9e-69 265.8 174 72.4
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 1.1e-68 263.8 175 72.6
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 1.4e-68 263.5 174 71.3
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 2.5e-68 262.7 174 70.7
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 2.5e-68 262.7 174 71.3
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 5.5e-68 261.5 174 71.3
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 5.5e-68 261.5 179 70.4
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 5.5e-68 261.5 175 69.7
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 7.2e-68 261.2 174 69.5
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 9.4e-68 260.8 171 70.2
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 9.4e-68 260.8 175 72.0
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.2e-67 260.4 175 71.4
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.2e-67 260.4 175 71.4
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.6e-67 260.0 175 71.4
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.6e-67 260.0 175 71.4
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.6e-67 258.5 173 69.4
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 4.6e-67 258.5 175 71.4
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 7.9e-67 257.7 175 70.3
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 7.9e-67 257.7 179 68.2
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.3e-66 256.1 166 73.5
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 2.3e-66 256.1 175 70.3
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 2.3e-66 256.1 175 70.3
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.0e-66 255.8 175 70.3
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 3.0e-66 255.8 178 68.5
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 3.9e-66 255.4 174 71.3
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 6.7e-66 254.6 175 70.9
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 8.8e-66 254.2 175 69.1
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.5e-65 253.4 174 69.0
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 2.0e-65 253.1 175 70.3
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 4.1e-63 245.4 179 64.8
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 3.4e-62 242.3 149 75.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.3e-61 240.4 194 60.3
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 4.2e-60 235.3 173 65.9
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 1.2e-59 233.8 173 65.9
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 3.6e-59 232.3 173 64.7
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 7.9e-59 231.1 190 60.0
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.4e-58 230.3 190 59.5
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 3.9e-58 228.8 191 59.7
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 6.3e-56 221.5 261 46.0
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 3.1e-55 219.2 286 44.8
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 1.0e-53 214.2 171 60.8
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 1.0e-53 214.2 171 60.8
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 1.7e-53 213.4 169 59.2
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 2.9e-53 212.6 171 60.2
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.4e-50 203.8 136 70.6
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.8e-50 203.4 135 71.1
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 2.6e-49 199.5 174 56.3
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 4.1e-47 192.2 140 63.6
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.3e-45 187.2 117 72.6
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 2.9e-45 186.0 109 78.9
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.0e-42 175.6 109 75.2
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 6.8e-42 174.9 93 90.3
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 6.8e-42 174.9 110 72.7
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-41 174.1 91 91.2
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.2e-41 174.1 109 71.6
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.0e-41 173.3 149 60.4
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 9.1e-39 164.5 108 68.5
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 2.0e-38 163.3 93 79.6
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 5.0e-37 158.7 122 63.9
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 8.5e-37 157.9 134 57.5
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.9e-36 156.8 107 67.3
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 5.5e-36 155.2 106 64.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.2e-33 147.5 85 80.0
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 7.5e-33 144.8 113 57.5
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 3.7e-32 142.5 115 65.2
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 3.7e-32 142.5 115 65.2
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 6.1e-27 125.2 90 70.0
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.0e-21 107.8 73 67.1
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.7e-19 99.0 66 74.2
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 3.7e-16 89.4 76 55.3
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 1.9e-12 77.0 59 61.0
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.5e-12 76.6 105 42.9
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 2.5e-12 76.6 56 60.7
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 8.1e-11 71.6 46 63.0
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.8e-10 70.5 48 70.8
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 2.3e-10 70.1 54 55.6
BolC3t21104H Brassica oleracea HOM05D046859 ORTHO05D040831 1.1e-07 61.2 54 59.3


User provided reference genes

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