Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.2e-155 553.1 278 100.0
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 4.1e-140 501.5 265 93.6
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.1e-129 466.8 265 87.5
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 8.9e-127 457.2 273 84.6
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.2e-125 452.6 260 86.9
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 9.5e-121 437.2 267 82.8
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.1e-120 436.0 268 83.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 3.1e-119 432.2 268 82.5
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-116 423.7 291 75.9
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.4e-116 423.3 274 77.4
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.1e-111 407.1 277 75.5
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 4.4e-110 401.7 240 84.2
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.0e-90 335.9 265 62.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 3.9e-90 335.5 261 65.5
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 8.7e-90 334.3 265 63.4
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 6.2e-88 328.2 259 61.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 6.2e-88 328.2 265 63.0
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 6.2e-88 328.2 269 63.2
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.1e-87 325.9 258 62.4
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 4.5e-86 322.0 254 62.2
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 1.3e-85 320.5 271 60.1
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 3.8e-85 318.9 257 61.9
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 4.9e-85 318.5 256 63.3
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.9e-84 316.6 276 58.3
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 3.2e-84 315.8 243 64.2
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 5.5e-84 315.1 257 60.3
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 5.5e-84 315.1 257 60.3
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.2e-83 313.9 259 60.2
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.6e-83 313.5 251 61.4
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 2.1e-83 313.2 252 61.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 3.5e-83 312.4 240 63.8
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.5e-83 312.4 256 59.8
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.0e-82 310.8 268 58.2
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.0e-82 310.8 287 56.4
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.0e-82 310.8 265 60.0
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.3e-82 310.5 243 63.4
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.8e-82 310.1 258 60.5
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.8e-82 310.1 254 63.8
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.5e-81 307.0 259 62.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 1.9e-81 306.6 269 60.2
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 5.6e-81 305.1 252 57.5
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 5.6e-81 305.1 257 61.5
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 7.4e-81 304.7 264 61.0
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 7.4e-81 304.7 224 65.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.3e-80 303.9 248 61.7
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 1.3e-80 303.9 235 64.3
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.6e-80 303.5 245 58.4
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 8.2e-80 301.2 257 58.8
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-79 300.4 253 59.7
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.8e-79 300.1 252 59.1
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 3.1e-79 299.3 279 55.6
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.3e-79 298.5 291 53.6
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.2e-78 297.4 233 62.7
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.5e-78 297.0 257 58.4
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.0e-78 296.6 247 60.3
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 2.6e-78 296.2 250 58.4
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 3.4e-78 295.8 283 56.5
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.3e-77 293.9 251 60.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.2e-77 293.1 269 56.5
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 4.9e-77 292.0 266 55.6
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.5e-76 289.7 263 58.9
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 3.2e-76 289.3 267 57.3
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.6e-75 287.0 243 60.1
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.0e-74 284.3 248 60.1
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.3e-74 283.1 268 56.0
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 3.0e-74 282.7 255 56.5
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.1e-74 282.0 268 55.2
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 6.3e-72 275.0 229 59.4
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 6.9e-71 271.6 262 56.1
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 7.7e-70 268.1 249 53.8
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.0e-69 267.7 270 50.7
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 8.5e-69 264.6 244 55.7
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 8.5e-69 264.6 246 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.4e-68 263.8 272 49.6
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 2.5e-68 263.1 252 55.6
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 5.5e-68 261.9 267 55.8
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.6e-67 259.2 249 54.6
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 6.1e-67 258.5 244 55.3
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.3e-66 256.5 387 40.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 5.1e-66 255.4 193 64.2
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 4.3e-65 252.3 250 53.6
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 5.7e-65 251.9 208 59.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 1.8e-63 246.9 277 49.1
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 2.4e-63 246.5 209 57.4
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 2.4e-63 246.5 242 48.8
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.1e-60 237.7 215 58.6
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 5.5e-60 235.3 144 82.6
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.2e-59 234.2 144 82.6
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 6.1e-59 231.9 126 87.3
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 7.9e-59 231.5 144 81.9
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 7.9e-59 231.5 144 81.9
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 2.0e-57 226.9 256 48.4
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 7.4e-57 224.9 240 51.2
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 9.7e-57 224.6 208 52.4
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.8e-56 223.0 207 56.0
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.4e-55 220.7 203 56.7
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.5e-54 216.1 150 69.3
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 5.2e-50 202.2 122 79.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.5e-49 200.7 267 45.3
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.5e-49 200.7 267 45.3
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.3e-49 199.5 156 63.5
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 7.4e-49 198.4 262 44.7
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.1e-47 194.5 157 58.6
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 2.9e-45 186.4 171 55.0
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 4.7e-43 179.1 162 56.2
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 1.7e-40 170.6 195 48.7
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.8e-40 169.9 256 41.4
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 8.3e-40 168.3 211 42.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.1e-39 167.9 133 59.4
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.4e-39 167.5 125 63.2
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 4.1e-39 166.0 148 58.1
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 7.7e-38 161.8 133 60.2
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 6.8e-34 148.7 127 60.6
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 4.8e-32 142.5 281 37.0
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.5e-30 136.3 113 59.3
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 8.0e-27 125.2 131 50.4
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.4e-26 124.4 290 29.7
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 4.4e-25 119.4 95 58.9
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 3.7e-24 116.3 245 33.9
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.5e-22 109.4 72 69.4
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.7e-21 107.5 96 57.3
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 7.3e-20 102.1 111 50.5
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 9.5e-20 101.7 128 45.3
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.6e-19 100.9 108 51.9
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 3.6e-19 99.8 97 52.6
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.0e-18 98.2 56 78.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-18 96.7 161 38.5
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 6.8e-18 95.5 73 60.3
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 4.9e-16 89.4 93 53.8
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 3.9e-13 79.7 62 62.9
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.3e-10 70.5 71 46.5
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 6.4e-08 62.4 40 70.0


User provided reference genes

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