Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 0.0e+00 1377.8 708 100.0
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 0.0e+00 1341.3 708 97.6
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 0.0e+00 1320.4 710 95.5
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 0.0e+00 1296.6 709 93.1
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 0.0e+00 1269.6 700 92.1
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 0.0e+00 1255.4 709 90.6
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 0.0e+00 1248.0 708 90.0
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 0.0e+00 1247.3 711 90.6
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 0.0e+00 1239.6 709 90.0
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 0.0e+00 1238.0 709 90.0
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 0.0e+00 1219.9 709 88.7
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 0.0e+00 1188.3 711 86.5
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 0.0e+00 1156.4 708 83.1
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 9.7e-287 989.9 689 73.1
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 2.8e-286 988.4 689 73.6
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 4.5e-284 981.1 701 71.8
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 1.0e-283 979.9 687 73.2
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 1.5e-282 976.1 686 73.3
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 1.5e-282 976.1 708 70.9
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 2.1e-281 972.2 716 71.2
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 4.7e-281 971.1 692 72.1
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 5.7e-279 964.1 678 71.5
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.3e-275 953.0 706 70.7
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 2.2e-275 952.2 706 70.7
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 2.2e-275 952.2 706 70.7
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 2.2e-275 952.2 686 70.8
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 2.9e-275 951.8 668 72.9
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 2.9e-275 951.8 668 72.9
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 1.5e-274 949.5 669 71.2
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 7.2e-274 947.2 690 70.4
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 7.2e-274 947.2 711 70.3
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 1.6e-273 946.0 704 70.2
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 3.6e-273 944.9 678 71.5
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 8.0e-273 943.7 676 70.6
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 8.0e-273 943.7 755 66.0
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.4e-272 943.0 676 70.6
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 5.2e-272 941.0 662 71.5
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 5.2e-272 941.0 717 68.2
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 6.8e-272 940.6 704 70.6
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 6.8e-272 940.6 700 69.3
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 1.5e-271 939.5 701 69.9
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 6.3e-270 934.1 682 71.1
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 8.3e-270 933.7 677 69.9
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 8.3e-270 933.7 711 67.5
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 1.8e-269 932.6 703 68.3
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 2.4e-269 932.2 708 67.9
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 2.0e-268 929.1 670 70.7
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 7.7e-268 927.2 712 68.4
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 7.7e-268 927.2 692 68.4
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 6.5e-267 924.1 715 68.0
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 1.1e-266 923.3 675 69.2
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 1.6e-265 919.5 676 70.6
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 1.6e-265 919.5 714 68.6
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 6.1e-265 917.5 688 68.8
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 8.0e-265 917.1 706 66.4
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.3e-264 915.6 674 69.6
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 6.8e-264 914.1 684 69.3
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 8.8e-264 913.7 720 66.5
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 4.4e-263 911.4 682 68.5
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 2.8e-262 908.7 703 67.3
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 3.7e-262 908.3 675 70.2
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 3.7e-262 908.3 712 67.1
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 4.9e-262 907.9 704 66.8
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 4.5e-260 901.4 681 68.7
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 2.3e-259 899.0 680 68.4
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 1.1e-258 896.7 685 67.6
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 9.5e-258 893.6 732 65.3
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 8.0e-257 890.6 697 66.6
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 5.7e-255 884.4 716 65.1
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 5.7e-255 884.4 657 68.6
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 1.8e-253 879.4 687 65.6
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 2.9e-251 872.1 715 65.6
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 5.6e-250 867.8 606 73.4
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 1.0e-248 863.6 676 67.2
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 5.2e-248 861.3 741 62.2
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 1.6e-244 849.7 698 65.6
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 6.0e-244 847.8 621 70.9
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 1.8e-240 836.3 670 63.1
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 6.8e-240 834.3 725 61.4
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 2.9e-238 828.9 669 65.8
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 6.4e-238 827.8 714 63.2
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 2.3e-235 819.3 676 63.8
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 3.9e-235 818.5 602 68.8
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 1.5e-231 806.6 598 69.9
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 3.4e-223 778.9 689 60.5
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 4.2e-221 771.9 614 66.4
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 1.6e-220 770.0 575 68.3
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 2.5e-218 762.7 616 63.6
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 6.9e-216 754.6 666 59.8
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 9.9e-215 750.7 560 68.8
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 1.9e-189 666.8 1282 36.3
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 9.7e-186 654.4 670 53.7
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 6.1e-180 635.2 618 55.7
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 6.7e-179 631.7 631 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 7.9e-172 608.2 657 50.4
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 1.3e-169 600.9 401 75.8
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.0e-163 581.3 444 68.2
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 3.7e-153 546.2 401 67.3
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.9e-141 507.3 418 65.6
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 3.4e-138 496.5 727 42.9
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 7.0e-136 488.8 288 89.9
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 5.6e-133 479.2 617 45.7
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 6.2e-132 475.7 472 53.4
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 5.2e-123 446.0 332 67.5
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 1.0e-110 405.2 273 72.9
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.2e-98 365.2 225 79.6
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 1.3e-94 351.7 468 47.6
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 5.6e-93 346.3 312 61.2
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 8.1e-92 342.4 285 63.9
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 3.1e-83 313.9 304 57.9
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 5.3e-83 313.2 203 76.8
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 9.3e-80 302.4 203 73.4
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 5.9e-74 283.1 631 33.6
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.5e-58 230.3 155 73.5
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.9e-48 198.4 148 64.9
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 1.7e-41 175.3 203 51.7
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 1.6e-39 168.7 148 61.5
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.2e-31 142.5 103 67.0
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 2.0e-26 125.2 133 55.6
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 1.7e-25 122.1 116 57.8
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 6.1e-23 113.6 200 42.0
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.4e-19 102.4 103 51.5
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.8e-15 88.2 68 64.7
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 3.6e-15 87.8 53 75.5
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.5e-13 82.4 96 51.0
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 2.6e-13 81.6 69 62.3


User provided reference genes

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