Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.5e-90 335.5 181 100.0
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.2e-89 330.5 181 98.3
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.9e-83 311.6 179 93.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.5e-82 309.7 181 92.3
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 4.3e-82 308.1 181 91.2
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 2.2e-78 295.8 182 89.0
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 2.2e-78 295.8 182 89.0
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 2.2e-78 295.8 182 88.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 2.2e-78 295.8 182 88.5
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 5.0e-78 294.7 182 88.5
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 5.0e-78 294.7 182 90.1
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.2e-77 292.0 182 87.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 4.2e-77 291.6 181 87.8
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-76 290.0 182 86.8
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.2e-76 290.0 181 87.3
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.2e-76 290.0 182 86.8
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 7.9e-76 287.3 182 86.8
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 7.9e-76 287.3 182 86.8
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.9e-75 285.0 182 85.7
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.3e-57 226.9 186 67.7
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.3e-57 224.2 182 67.6
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.0e-54 217.2 187 63.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 7.2e-53 211.1 188 62.2
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.6e-36 156.8 193 53.9
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.1e-32 144.1 177 49.2
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 3.2e-32 142.5 185 50.8
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 4.1e-32 142.1 182 48.4
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.6e-31 140.2 185 50.8
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 2.0e-31 139.8 187 49.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 3.5e-31 139.0 189 48.1
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.7e-30 136.7 184 48.9
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.7e-30 136.7 184 48.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.3e-30 136.3 180 49.4
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.0e-30 136.0 186 50.0
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 8.6e-30 134.4 185 47.0
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 8.6e-30 134.4 180 47.2
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.5e-29 133.7 188 46.8
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.5e-29 132.9 186 48.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 2.5e-29 132.9 184 50.0
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 4.3e-29 132.1 184 45.7
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 4.3e-29 132.1 183 46.4
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 5.6e-29 131.7 181 48.1
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 9.5e-29 131.0 177 48.0
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.2e-28 130.6 189 46.6
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.6e-28 130.2 178 50.6
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.1e-28 129.8 186 45.7
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 6.2e-28 128.3 180 43.9
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-27 127.5 180 46.1
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.4e-27 127.1 184 45.7
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.4e-27 127.1 175 50.3
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-27 126.7 181 48.1
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 5.2e-27 125.2 180 44.4
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.2e-26 124.0 179 44.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 1.5e-26 123.6 185 47.0
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.0e-26 123.2 189 45.5
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.0e-26 123.2 185 44.3
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.6e-26 122.9 186 44.6
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 3.4e-26 122.5 179 43.0
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 3.4e-26 122.5 179 44.7
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.4e-26 122.5 176 46.0
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.4e-26 122.1 175 46.9
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 5.8e-26 121.7 175 45.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 5.8e-26 121.7 183 42.1
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.5e-26 121.3 181 48.6
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 9.8e-26 120.9 201 42.8
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 9.8e-26 120.9 175 45.7
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 9.8e-26 120.9 190 45.3
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.2e-25 119.8 190 41.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 2.9e-25 119.4 184 44.0
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.1e-24 117.5 188 42.0
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.4e-24 116.3 187 41.7
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 2.4e-24 116.3 187 42.2
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.2e-24 115.9 182 44.0
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.2e-24 115.9 180 42.8
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 7.0e-24 114.8 188 42.0
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 9.2e-24 114.4 186 44.6
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.6e-23 113.6 204 39.7
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.1e-23 113.2 181 43.1
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 2.7e-23 112.8 183 41.5
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 3.5e-23 112.5 190 42.6
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 3.5e-23 112.5 183 41.5
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 4.6e-23 112.1 175 41.1
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 6.0e-23 111.7 181 42.0
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.3e-22 110.5 186 40.9
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.7e-22 110.2 175 45.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 3.9e-22 109.0 181 44.2
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.1e-21 107.5 178 43.3
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.9e-21 106.7 189 38.1
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.9e-21 106.7 186 38.7
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.9e-21 106.7 181 42.0
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.5e-21 106.3 178 41.6
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.5e-21 106.3 175 41.1
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 5.6e-21 105.1 179 39.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 7.3e-21 104.8 183 39.3
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.2e-20 104.0 191 41.9
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.6e-20 103.6 170 43.5
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 3.6e-20 102.4 190 39.5
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 4.7e-20 102.1 180 40.0
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 6.2e-20 101.7 168 40.5
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 6.2e-20 101.7 189 38.6
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.1e-19 100.9 149 49.0
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.4e-19 100.5 179 39.1
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.4e-19 100.5 176 39.2
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.4e-19 100.5 186 39.2
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.9e-19 97.8 172 39.0
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.6e-18 96.3 182 42.9
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 3.4e-18 95.9 181 34.3
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 4.4e-18 95.5 188 36.2
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 5.8e-18 95.1 183 35.5
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 5.8e-18 95.1 171 37.4
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 5.8e-18 95.1 183 35.5
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 5.8e-18 95.1 171 37.4
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.3e-17 94.0 157 44.6
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.7e-17 92.4 172 34.9
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 6.4e-17 91.7 183 34.4
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 6.4e-17 91.7 164 40.9
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 8.3e-17 91.3 154 46.1
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.1e-16 90.9 149 45.6
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-16 90.9 181 33.7
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.4e-16 90.5 178 39.3
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.9e-16 90.1 186 37.6
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.4e-16 89.7 161 42.9
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 3.2e-16 89.4 171 35.7
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 4.1e-16 89.0 178 38.8
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 7.1e-16 88.2 166 37.3
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 9.2e-16 87.8 149 43.6
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 9.2e-16 87.8 171 35.7
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-15 87.0 153 38.6
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 4.6e-15 85.5 154 41.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 6.0e-15 85.1 171 32.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.0e-14 82.8 168 40.5
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 8.6e-14 81.3 165 33.9
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 8.6e-14 81.3 168 33.9
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.9e-13 80.1 133 39.8
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.3e-13 79.3 154 40.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 4.3e-13 79.0 69 59.4
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 9.6e-13 77.8 181 37.6
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 1.2e-12 77.4 190 33.7
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.8e-12 76.3 119 42.9
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 8.1e-12 74.7 148 41.2
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.1e-11 74.3 151 35.1
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 1.8e-11 73.6 178 31.5
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 2.0e-10 70.1 186 31.7
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 2.6e-10 69.7 181 35.4
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 3.2e-08 62.8 98 39.8
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.1e-07 60.1 155 34.2
SMO144G0179 Selaginella moellendorffii HOM05D026704 ORTHO05D030102 2.7e-07 59.7 150 29.3
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.0e-06 56.2 54 53.7
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 3.9e-06 55.8 167 30.5
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 8.7e-06 54.7 198 28.8
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 8.7e-06 54.7 186 29.6


User provided reference genes

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