Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 5.9e-46 187.2 96 100.0
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 4.7e-43 177.6 96 93.8
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 3.0e-42 174.9 96 90.6
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 2.0e-41 172.2 96 89.6
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 1.8e-39 165.6 96 87.5
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 1.3e-37 159.5 91 87.9
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 1.5e-36 156.0 91 86.8
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 4.3e-36 154.5 93 81.7
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 3.6e-35 151.4 97 78.4
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 3.6e-35 151.4 93 79.6
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 3.6e-35 151.4 93 79.6
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 8.9e-34 146.7 93 77.4
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 4.9e-32 141.0 90 73.3
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 3.3e-28 128.3 89 78.7
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 3.6e-27 124.8 84 72.6
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 2.6e-25 118.6 84 69.0
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 3.4e-25 118.2 84 66.7
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 4.4e-25 117.9 84 66.7
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 5.8e-25 117.5 88 62.5
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 5.8e-25 117.5 84 65.5
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 7.5e-25 117.1 84 66.7
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 9.8e-25 116.7 84 66.7
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 1.3e-24 116.3 85 63.5
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.7e-24 115.9 83 66.3
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 2.2e-24 115.5 83 66.3
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 2.2e-24 115.5 84 64.3
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 2.2e-24 115.5 86 65.1
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 2.9e-24 115.2 84 65.5
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 3.7e-24 114.8 84 63.1
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 3.7e-24 114.8 84 66.7
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 3.7e-24 114.8 84 66.7
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 6.4e-24 114.0 82 67.1
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 8.3e-24 113.6 84 64.3
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 1.4e-23 112.8 84 59.5
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 1.4e-23 112.8 88 60.2
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 2.4e-23 112.1 82 64.6
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 4.1e-23 111.3 84 61.9
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 5.4e-23 110.9 84 63.1
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 9.2e-23 110.2 85 58.8
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 2.7e-22 108.6 86 57.0
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 4.6e-22 107.8 87 62.1
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 4.6e-22 107.8 82 62.2
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 6.0e-22 107.5 78 66.7
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 7.8e-22 107.1 84 60.7
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 1.0e-21 106.7 84 59.5
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 1.0e-21 106.7 84 59.5
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 1.0e-21 106.7 56 92.9
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 1.0e-21 106.7 85 60.0
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 3.0e-21 105.1 88 54.5
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 3.0e-21 105.1 97 55.7
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 6.6e-21 104.0 85 55.3
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 8.6e-21 103.6 77 64.9
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 8.6e-21 103.6 82 59.8
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 7.3e-20 100.5 78 61.5
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 1.2e-19 99.8 84 57.1
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 1.2e-19 99.8 84 57.1
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 1.6e-19 99.4 88 53.4
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 2.1e-19 99.0 78 61.5
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 2.8e-19 98.6 78 59.0
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 2.8e-19 98.6 84 53.6
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 4.7e-19 97.8 82 56.1
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 5.2e-18 94.4 78 56.4
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 1.2e-17 93.2 78 56.4
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 2.6e-17 92.0 83 54.2
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 3.4e-17 91.7 114 47.4
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 3.4e-17 91.7 72 62.5
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 4.4e-17 91.3 74 59.5
AagrBONN_evm.TU.Sc2ySwM_228.1824 Anthoceros agrestis HOM05D008013 ORTHO05D010149 1.7e-16 89.4 79 59.5
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 1.9e-15 85.9 59 76.3
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 1.9e-15 85.9 78 55.1
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 7.1e-15 84.0 100 48.0
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 3.6e-11 71.6 90 41.1
Mapoly0013s0068 Marchantia polymorpha HOM05D008013 ORTHO05D010149 1.8e-10 69.3 85 41.2
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 4.4e-09 64.7 57 54.4
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 4.9e-08 61.2 47 59.6
ATR0609G113 Amborella trichopoda HOM05D008013 ORTHO05D010149 1.1e-07 60.1 49 55.1
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 7.1e-07 57.4 44 59.1
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 1.2e-06 56.6 43 62.8
Cre12.g484300 Chlamydomonas reinhardtii HOM05D008013 ORTHO05D010149 4.6e-06 54.7 80 36.2
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 6.0e-06 54.3 46 52.2
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 7.8e-06 53.9 44 56.8


User provided reference genes

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